Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006029A_C01 KMC006029A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_439177.1| H. influenzae predicted coding region HI1016 [H... 36 0.28
ref|XP_145574.2| RIKEN cDNA C630016O21 [Mus musculus] gi|2635028... 34 1.1
sp|P37443|YCAI_ECOLI Hypothetical protein ycaI 32 5.3
ref|NP_415433.1| orf, hypothetical protein [Escherichia coli K12... 32 5.3
pir||T14156 kinesin-related protein - African clawed frog gi|258... 32 5.3
>ref|NP_439177.1| H. influenzae predicted coding region HI1016 [Haemophilus
influenzae Rd] gi|1175365|sp|P44095|YA16_HAEIN
Hypothetical protein HI1016 gi|1074606|pir||E64018
hypothetical protein HI1016 - Haemophilus influenzae
(strain Rd KW20) gi|1574051|gb|AAC22681.1| H. influenzae
predicted coding region HI1016 [Haemophilus influenzae
Rd]
Length = 142
Score = 35.8 bits (81), Expect = 0.28
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 128 VSDSQVKFISPLYPSCKVVKVWWPCFWIPVFT 33
++ S K++S YP+ K V +W+PC W VF+
Sbjct: 109 IATSAGKYLSDNYPNLKGVGIWFPCTWFAVFS 140
>ref|XP_145574.2| RIKEN cDNA C630016O21 [Mus musculus] gi|26350285|dbj|BAC38782.1|
unnamed protein product [Mus musculus]
Length = 735
Score = 33.9 bits (76), Expect = 1.1
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 135 SSQITHHGRIWITIFQSLWKEGSNSSKIDTMEQL 236
+S++T HG I+ ++ + LW+EG ++K D ++
Sbjct: 111 ASEVTKHGSIYCSVLEKLWQEGDPAAKTDQQSRV 144
>sp|P37443|YCAI_ECOLI Hypothetical protein ycaI
Length = 754
Score = 31.6 bits (70), Expect = 5.3
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 31 KVKTGIQKQGHQTFTTLHDGYKGEINFTCESDTISQVKSHIMEEYGSQFFKV 186
KVK Q QG+Q T H G + +NF+ + IS ++ I+ + Q+F V
Sbjct: 699 KVKHRYQLQGYQWIDTPHQG-QTTVNFSAQGWRISSLREQILPRWYHQWFGV 749
>ref|NP_415433.1| orf, hypothetical protein [Escherichia coli K12]
gi|7466802|pir||H64830 probable membrane protein ycaI -
Escherichia coli (strain K-12) gi|1787142|gb|AAC73999.1|
orf, hypothetical protein [Escherichia coli K12]
gi|4062485|dbj|BAA35657.1| Hypothetical protein (msbA 5'
region) [Escherichia coli K12]
Length = 780
Score = 31.6 bits (70), Expect = 5.3
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 31 KVKTGIQKQGHQTFTTLHDGYKGEINFTCESDTISQVKSHIMEEYGSQFFKV 186
KVK Q QG+Q T H G + +NF+ + IS ++ I+ + Q+F V
Sbjct: 725 KVKHRYQLQGYQWIDTPHQG-QTTVNFSAQGWRISSLREQILPRWYHQWFGV 775
>pir||T14156 kinesin-related protein - African clawed frog
gi|2586071|gb|AAC60300.1| kinesin-related protein
[Xenopus laevis]
Length = 2954
Score = 31.6 bits (70), Expect = 5.3
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 297 HTGHSNSTSPVSAQHFKHTPIR*MNQSLPSQHPILGLAR*KSRYTRRYLSAFRR---AMQ 467
HTG S+ SP + ++H P+ +PS H LG + T+R +S R +
Sbjct: 2761 HTGSSHRGSPHKTETYRHGPVTPERSEMPSLH--LGSPKKSESSTKRVVSPNRSEIYSQL 2818
Query: 468 VLQPAEL-LHSH 500
V+ P + +H H
Sbjct: 2819 VMSPGKTGMHKH 2830
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,516,377
Number of Sequences: 1393205
Number of extensions: 9918006
Number of successful extensions: 20384
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20375
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
