Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006010A_C01 KMC006010A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563954.1| expressed protein; protein id: At1g14570.1, sup... 181 9e-45
pir||D86280 protein T5E21.7 [imported] - Arabidopsis thaliana gi... 145 6e-34
ref|NP_193161.1| hypothetical protein; protein id: At4g14250.1 [... 64 1e-09
gb|EAA10279.1| agCP15178 [Anopheles gambiae str. PEST] 42 0.005
gb|AAF79774.1|AC009317_33 T30E16.10 [Arabidopsis thaliana] 41 0.011
>ref|NP_563954.1| expressed protein; protein id: At1g14570.1, supported by cDNA:
gi_13877612, supported by cDNA: gi_17978788 [Arabidopsis
thaliana] gi|13877613|gb|AAK43884.1|AF370507_1 Unknown
protein [Arabidopsis thaliana]
gi|17978789|gb|AAL47388.1| unknown protein [Arabidopsis
thaliana]
Length = 468
Score = 181 bits (458), Expect = 9e-45
Identities = 100/183 (54%), Positives = 124/183 (67%), Gaps = 11/183 (6%)
Frame = +2
Query: 113 MEGVLSAIEQQSMVSSFLEVAQGQTADTARQFLQATSWKLEEALQLFLIGNEAGAVPPPS 292
MEG+LS+ +QQ +VSSFLE+A GQTA+TARQFLQATSWKLEEA+QLF IGNE G +
Sbjct: 1 MEGMLSSGDQQRLVSSFLEIAVGQTAETARQFLQATSWKLEEAIQLFYIGNEGGML-QSG 59
Query: 293 SHTPPLENADSWTDHQTSSEPRKDAANESSGHNDGEDVRPPLPVIRETLYDDAMLFGASR 472
+HT P N D+ S NE ND ++VR PLPV+RETLY ++M +GA R
Sbjct: 60 THTQPASNDDAAAQ---SWGAATGTGNEMILPNDVDEVRAPLPVVRETLYGESMYYGAMR 116
Query: 473 FGQRPQEPNALVAFRNFEEEMRRPGVWESDQG--------AASTPESS---RDNLASLYR 619
G EPN+L+AFRNF EE + PG+WE D+G +AS ES+ RD+LASLYR
Sbjct: 117 VGNSQPEPNSLIAFRNFSEEPKSPGIWEPDEGDSSASASASASASESASAPRDSLASLYR 176
Query: 620 PPF 628
PPF
Sbjct: 177 PPF 179
>pir||D86280 protein T5E21.7 [imported] - Arabidopsis thaliana
gi|7527718|gb|AAF63167.1|AC010657_3 T5E21.7 [Arabidopsis
thaliana]
Length = 514
Score = 145 bits (365), Expect = 6e-34
Identities = 97/234 (41%), Positives = 121/234 (51%), Gaps = 65/234 (27%)
Frame = +2
Query: 122 VLSAIEQQSMVSSFLEVAQGQTADTARQFLQATSWKLEEALQLFLIGNEAGAVPPPSSHT 301
+LS+ +QQ +VSSFLE+A GQTA+TARQFLQATSWKLEEA+QLF IGNE G + +HT
Sbjct: 1 MLSSGDQQRLVSSFLEIAVGQTAETARQFLQATSWKLEEAIQLFYIGNEGGMLQS-GTHT 59
Query: 302 PPLENADSWTDHQTSSEPRKDAANESSGHNDGEDVRPPLPVIRETLYDD----------- 448
P N D+ ++ NE ND ++VR PLPV+RETLY +
Sbjct: 60 QPASNDDAAAQSWGAAT---GTGNEMILPNDVDEVRAPLPVVRETLYGESMYYGLVSFSV 116
Query: 449 --------AMLFG-----------------------------------ASRFGQRPQEPN 499
A LF A R G EPN
Sbjct: 117 EDLSSEARAALFSFLTLMDLVEYLVGSSKLLAASGSGSVGISAVGESMAMRVGNSQPEPN 176
Query: 500 ALVAFRNFEEEMRRPGVWESDQG--------AASTPESS---RDNLASLYRPPF 628
+L+AFRNF EE + PG+WE D+G +AS ES+ RD+LASLYRPPF
Sbjct: 177 SLIAFRNFSEEPKSPGIWEPDEGDSSASASASASASESASAPRDSLASLYRPPF 230
>ref|NP_193161.1| hypothetical protein; protein id: At4g14250.1 [Arabidopsis
thaliana] gi|7485039|pir||B71404 hypothetical protein -
Arabidopsis thaliana gi|2244781|emb|CAB10204.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268130|emb|CAB78467.1| hypothetical protein
[Arabidopsis thaliana]
Length = 724
Score = 64.3 bits (155), Expect = 1e-09
Identities = 50/173 (28%), Positives = 73/173 (41%), Gaps = 2/173 (1%)
Frame = +2
Query: 113 MEGVLSAIEQQSMVSSFLEVAQGQTADTARQFLQATSWKLEEALQLFLIGNEAGAVPPPS 292
ME +Q+ ++SSFL++ QT + A QFL+AT+W LE+A+ LFLI
Sbjct: 1 METATRTHQQRKLISSFLDITVNQTVEIATQFLEATTWNLEDAINLFLI----------- 49
Query: 293 SHTPPLENADSWTDHQTSSEPRKDAANESSGHNDGEDVRP-PLPVIRETLYD-DAMLFGA 466
A + H+ GE++ P PLP + TLYD D +
Sbjct: 50 -------------------------ARRNPHHHHGEELVPLPLPSKKNTLYDYDPFMSHN 84
Query: 467 SRFGQRPQEPNALVAFRNFEEEMRRPGVWESDQGAASTPESSRDNLASLYRPP 625
+ P+E +W+ + ST E S L+SLYRPP
Sbjct: 85 TSVAVCPEE------------------IWDDE----STSEESDSRLSSLYRPP 115
>gb|EAA10279.1| agCP15178 [Anopheles gambiae str. PEST]
Length = 330
Score = 42.4 bits (98), Expect = 0.005
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
Frame = +2
Query: 152 VSSFLEVAQGQTADTARQFLQATSWKLEEALQLFLIGNEAGAVPPPSSHTPPLENADSWT 331
V + +E+ G D A L A + LE A+ F E P P+ +++ DS +
Sbjct: 37 VKALVEIT-GLKEDQATNLLTAYNGNLEGAINAFYENPEGILNPEPAV---VIDDDDSGS 92
Query: 332 DHQTSSEPRKDAANESSGHNDGEDVRPPLPVIRETLYDDAMLFGASRFGQRPQEPNALVA 511
SS P AA H+D ++VR P+P E L + +R G+R V
Sbjct: 93 G--PSSAPSGRAALV---HDDDDNVRAPIPRKTEILLPQIEM-NRARIGKRRAAIITEVP 146
Query: 512 FRNFEEE--MRRPGVWESDQGAASTPESSRDNLASLYRPPF 628
FRNFE E ++ + + DQG ++ + L +L+ PPF
Sbjct: 147 FRNFELEGRIQEQMLMQQDQGPSAKKVT---RLEALFMPPF 184
>gb|AAF79774.1|AC009317_33 T30E16.10 [Arabidopsis thaliana]
Length = 268
Score = 41.2 bits (95), Expect = 0.011
Identities = 17/37 (45%), Positives = 30/37 (80%)
Frame = +2
Query: 140 QQSMVSSFLEVAQGQTADTARQFLQATSWKLEEALQL 250
Q+++VS+FL ++ QT +TA + L++T+WKLE+A+ L
Sbjct: 6 QRTLVSAFLNISVDQTVETAIKCLKSTNWKLEDAINL 42
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,403,272
Number of Sequences: 1393205
Number of extensions: 13717956
Number of successful extensions: 57438
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 53616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57300
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
