Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005979A_C01 KMC005979A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_192980.1| similar to steroid 5 alpha-reductase 2-like; H5... 35 0.61
gb|AAD30567.1|AF146793_4 SRD5A2L [Mus musculus] 34 1.4
ref|NP_694906.1| NADH dehydrogenase subunit 6 [Brugia malayi] gi... 33 1.8
sp|P43056|YLI2_MYCHO Hypothetical 31.2 kDa protein in LICA 3'reg... 33 3.0
gb|EAA39370.1| GLP_336_20998_24627 [Giardia lamblia ATCC 50803] 33 3.0
>ref|XP_192980.1| similar to steroid 5 alpha-reductase 2-like; H5AR gene; steroid 5
alpha-reductase 2 like [Mus musculus]
gi|27881427|ref|NP_065636.2| steroid 5 alpha-reductase
2-like; H5AR gene; steroid 5 alpha-reductase 2 like [Mus
musculus] gi|26333639|dbj|BAC30537.1| unnamed protein
product [Mus musculus] gi|26344441|dbj|BAC35871.1|
unnamed protein product [Mus musculus]
Length = 330
Score = 35.0 bits (79), Expect = 0.61
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -1
Query: 522 YRFICTTKMLSPLMIYTNNTELY*AHATKWWNFITGSENAYFVVYFMYEHVTILCWFNSK 343
+ ++ + L+ LMIY + + H WW VV +++ + +FN K
Sbjct: 260 FEYVSSANYLAELMIYISMAVTFGLHNLTWW----------LVVTYVFSSQALSAFFNHK 309
Query: 342 PVCISSFLPHP*HRRGFFIF 283
S+F+ +P HR+ F F
Sbjct: 310 -FYRSTFVSYPKHRKAFLPF 328
>gb|AAD30567.1|AF146793_4 SRD5A2L [Mus musculus]
Length = 330
Score = 33.9 bits (76), Expect = 1.4
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -1
Query: 522 YRFICTTKMLSPLMIYTNNTELY*AHATKWWNFITGSENAYFVVYFMYEHVTILCWFNSK 343
+ ++ + L+ LMIY + + H WW VV +++ + +FN K
Sbjct: 260 FEYVSSANYLAELMIYISMAVTFGLHNLTWW----------LVVTYVFFSQALSAFFNHK 309
Query: 342 PVCISSFLPHP*HRRGFFIF 283
S+F+ +P HR+ F F
Sbjct: 310 -FYRSTFVSYPKHRKAFLPF 328
>ref|NP_694906.1| NADH dehydrogenase subunit 6 [Brugia malayi]
gi|23307679|gb|AAN17807.1| NADH dehydrogenase subunit 6
[Brugia malayi]
Length = 150
Score = 33.5 bits (75), Expect = 1.8
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 184 VEWSMIESCISQIVGL---SPHLFLDVR*T*ICIFYLIFLQGIFILFTYS*IGIGGINAY 14
++W ++SCI +G+ S ++ L V LIFL GIF L TY I G N Y
Sbjct: 19 LDWDPMKSCIMMCLGILFMSCYISLGVHVWYSYFIVLIFLSGIFSLLTYF-CSISGCNYY 77
Query: 13 F 11
+
Sbjct: 78 Y 78
>sp|P43056|YLI2_MYCHO Hypothetical 31.2 kDa protein in LICA 3'region (ORF268)
gi|453422|emb|CAA54668.1| orf268 [Mycoplasma hominis]
Length = 268
Score = 32.7 bits (73), Expect = 3.0
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +2
Query: 29 SNSNLTISK*DKYPL-------QKNKIKYADLCLPHIKE*VRAQTYN-LRDTRLYHAPFN 184
+NSN TI K D L NKI D L +I+ A TY+ +++ +L++
Sbjct: 146 TNSNQTIFKLDLIQLWNEINSKSNNKISEFDF-LSNIESINNAMTYSYIKNNKLFYFDNK 204
Query: 185 QNHSGYLEPDFLKNF 229
Q +SGY+ F +NF
Sbjct: 205 QGYSGYIIQKFFENF 219
>gb|EAA39370.1| GLP_336_20998_24627 [Giardia lamblia ATCC 50803]
Length = 1209
Score = 32.7 bits (73), Expect = 3.0
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Frame = +2
Query: 152 RDTRLYHAPFNQNHSGYLEPD----FLKNFRREKNHPFPSF-------TRYSLDVNMKKP 298
RD R YH NQ++SG + D FL R+ K P+ T SL + P
Sbjct: 460 RDDRSYHLNSNQSNSGTIGLDGTGTFLHQQRKSKPRPYSGHSSNTVFNTELSLKLTQVPP 519
Query: 299 LLCQGWG--RKEEIHTGFELNQHN 364
LL +G R + + T EL N
Sbjct: 520 LLSNTFGEQRNDPLSTSTELCPSN 543
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,967,878
Number of Sequences: 1393205
Number of extensions: 10631472
Number of successful extensions: 23904
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23893
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
