Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005970A_C01 KMC005970A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192095.2| hypothetical protein; protein id: At4g01860.1, ... 113 1e-24
pir||H85023 hypothetical protein AT4g01860 [imported] - Arabidop... 89 2e-17
ref|NP_002660.1| pleiotropic regulator 1 (PRL1homolog, Arabidops... 38 0.070
ref|NP_068525.1| pleiotropic regulator 1 [Rattus norvegicus] gi|... 38 0.070
gb|AAH20786.1|AAH20786 Similar to pleiotropic regulator 1 (PRL1,... 38 0.070
>ref|NP_192095.2| hypothetical protein; protein id: At4g01860.1, supported by cDNA:
gi_19699002 [Arabidopsis thaliana]
gi|19699003|gb|AAL91237.1| unknown protein [Arabidopsis
thaliana]
Length = 1308
Score = 113 bits (283), Expect = 1e-24
Identities = 54/78 (69%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Frame = -1
Query: 495 AHSASVKGV*TDGSWVFSTGLDQRVRCWNLHQR-KLIEHAHLIVSVPEPEALSARACGRN 319
AHS+++KGV D +WVFSTGLDQRVRCW L + KLIEHAH+++SVPEPEAL A+A N
Sbjct: 1231 AHSSAIKGVWMDTNWVFSTGLDQRVRCWFLEKDGKLIEHAHIVISVPEPEALDAKAIDEN 1290
Query: 318 HYQIAVAGRGMQIVDFSG 265
YQIAVAGRG+Q+V+FSG
Sbjct: 1291 RYQIAVAGRGIQMVEFSG 1308
>pir||H85023 hypothetical protein AT4g01860 [imported] - Arabidopsis thaliana
gi|4558555|gb|AAD22648.1|AC007138_12 hypothetical protein
[Arabidopsis thaliana] gi|7268570|emb|CAB80679.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1216
Score = 89.4 bits (220), Expect = 2e-17
Identities = 46/78 (58%), Positives = 57/78 (72%), Gaps = 1/78 (1%)
Frame = -1
Query: 495 AHSASVKGV*TDGSWVFSTGLDQRVRCWNLHQR-KLIEHAHLIVSVPEPEALSARACGRN 319
AHS+++KG LDQRVRCW L + KLIEHAH+++SVPEPEAL A+A N
Sbjct: 1151 AHSSAIKG------------LDQRVRCWFLEKDGKLIEHAHIVISVPEPEALDAKAIDEN 1198
Query: 318 HYQIAVAGRGMQIVDFSG 265
YQIAVAGRG+Q+V+FSG
Sbjct: 1199 RYQIAVAGRGIQMVEFSG 1216
>ref|NP_002660.1| pleiotropic regulator 1 (PRL1homolog, Arabidopsis); pleiotropic
regulator 1 (PRL1, Arabidopsis homolog) [Homo sapiens]
gi|2832296|gb|AAD09407.1| pleiotropic regulator 1 [Homo
sapiens]
Length = 514
Score = 37.7 bits (86), Expect = 0.070
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -1
Query: 492 HSASVKGV*--TDGSWVFSTGLDQRVRCWNLHQRKLIEHAH 376
H ++V+GV T ++FS G D++V+CW+L K+I H H
Sbjct: 245 HISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYH 285
>ref|NP_068525.1| pleiotropic regulator 1 [Rattus norvegicus]
gi|4581928|gb|AAD24799.1|AF128241_1 pleiotropic
regulator 1 [Rattus norvegicus]
Length = 514
Score = 37.7 bits (86), Expect = 0.070
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -1
Query: 492 HSASVKGV*--TDGSWVFSTGLDQRVRCWNLHQRKLIEHAH 376
H ++V+GV T ++FS G D++V+CW+L K+I H H
Sbjct: 245 HISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYH 285
>gb|AAH20786.1|AAH20786 Similar to pleiotropic regulator 1 (PRL1, Arabidopsis homolog)
[Homo sapiens]
Length = 505
Score = 37.7 bits (86), Expect = 0.070
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -1
Query: 492 HSASVKGV*--TDGSWVFSTGLDQRVRCWNLHQRKLIEHAH 376
H ++V+GV T ++FS G D++V+CW+L K+I H H
Sbjct: 236 HISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYH 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,651,596
Number of Sequences: 1393205
Number of extensions: 8891908
Number of successful extensions: 19555
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 18792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19550
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
