Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005950A_C01 KMC005950A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195427.1| putative protein; protein id: At4g37100.1 [Arab... 50 2e-05
ref|NP_179933.1| hypothetical protein; protein id: At2g23520.1 [... 49 6e-05
ref|NP_201496.1| putative protein; protein id: At5g66950.1 [Arab... 40 0.021
ref|XP_214974.1| similar to tyrosine kinase Fps/Fes [Mus musculu... 35 0.67
ref|XP_133573.1| feline sarcoma oncogene [Mus musculus] 35 0.67
>ref|NP_195427.1| putative protein; protein id: At4g37100.1 [Arabidopsis thaliana]
gi|25371571|pir||C85438 hypothetical protein AT4g37100
[imported] - Arabidopsis thaliana
gi|4006867|emb|CAB16785.1| putative protein [Arabidopsis
thaliana] gi|7270659|emb|CAB80376.1| putative protein
[Arabidopsis thaliana]
Length = 896
Score = 50.1 bits (118), Expect = 2e-05
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -2
Query: 579 VYKLWAFVAKFLNPAFVREGGGLPTVEEDSE 487
VYKLW FVAKFLNP F RE G LPTVEE+ E
Sbjct: 860 VYKLWVFVAKFLNPGFSRE-GSLPTVEEEEE 889
>ref|NP_179933.1| hypothetical protein; protein id: At2g23520.1 [Arabidopsis
thaliana] gi|7486165|pir||T01141 hypothetical protein
At2g23520 [imported] - Arabidopsis thaliana
gi|3242715|gb|AAC23767.1| hypothetical protein
[Arabidopsis thaliana]
Length = 862
Score = 48.5 bits (114), Expect = 6e-05
Identities = 27/36 (75%), Positives = 27/36 (75%), Gaps = 4/36 (11%)
Frame = -2
Query: 579 VYKLWAFVAKFLNPAFVREGGGLPTV----EEDSET 484
VYKLWAFVAKFLNP F RE G LPTV EDSET
Sbjct: 828 VYKLWAFVAKFLNPGFSRE-GSLPTVIEEEAEDSET 862
>ref|NP_201496.1| putative protein; protein id: At5g66950.1 [Arabidopsis thaliana]
gi|9758540|dbj|BAB08934.1|
emb|CAB16785.1~gene_id:K8A10.2~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 870
Score = 40.0 bits (92), Expect = 0.021
Identities = 18/32 (56%), Positives = 25/32 (77%)
Frame = -2
Query: 579 VYKLWAFVAKFLNPAFVREGGGLPTVEEDSET 484
VY+LW FVAKFL+P F ++ G LPTV E+ ++
Sbjct: 837 VYRLWNFVAKFLSPGFAKQ-GTLPTVIEEDDS 867
>ref|XP_214974.1| similar to tyrosine kinase Fps/Fes [Mus musculus] [Rattus
norvegicus]
Length = 160
Score = 35.0 bits (79), Expect = 0.67
Identities = 21/68 (30%), Positives = 32/68 (46%)
Frame = +2
Query: 371 ILPAAFGFRPLPLFGNIPQIIFHVRFSKLNQPAKFPSHVSESSSTVGRPPPSLTNAGLRN 550
I A+ G R +P+ P+ + + R+S + F + E+ S P P+LTN R
Sbjct: 50 IYAASAGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLTNQQTRE 109
Query: 551 FATKAHNL 574
F K H L
Sbjct: 110 FVEKGHRL 117
>ref|XP_133573.1| feline sarcoma oncogene [Mus musculus]
Length = 327
Score = 35.0 bits (79), Expect = 0.67
Identities = 21/68 (30%), Positives = 32/68 (46%)
Frame = +2
Query: 371 ILPAAFGFRPLPLFGNIPQIIFHVRFSKLNQPAKFPSHVSESSSTVGRPPPSLTNAGLRN 550
I A+ G R +P+ P+ + + R+S + F + E+ S P P+LTN R
Sbjct: 217 IYAASAGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLTNQQTRE 276
Query: 551 FATKAHNL 574
F K H L
Sbjct: 277 FVEKGHRL 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,356,803
Number of Sequences: 1393205
Number of extensions: 11765631
Number of successful extensions: 38758
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 37448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38736
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
