Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005915A_C01 KMC005915A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84446.1|AC087192_7 unknown protein [Oryza sativa (japonica... 63 4e-16
ref|NP_030521.1| expressed protein; protein id: At2g39750.1, sup... 77 8e-14
gb|AAL86466.1|AC077693_5 hypothetical protein [Oryza sativa (jap... 59 2e-13
ref|NP_565153.1| expressed protein; protein id: At1g77260.1, sup... 76 2e-13
pir||T00454 hypothetical protein T14N5.11 - Arabidopsis thaliana... 76 2e-13
>gb|AAK84446.1|AC087192_7 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 634
Score = 62.8 bits (151), Expect(2) = 4e-16
Identities = 25/38 (65%), Positives = 32/38 (83%)
Frame = -2
Query: 519 DWCEPFDTYPRTYDLLHAANLLSVEKKRCNVSSIMLEM 406
DWCE F TYPRTYDLLHA NL S+ + RC++++I+LEM
Sbjct: 533 DWCEAFSTYPRTYDLLHADNLFSIYQDRCDITNILLEM 570
Score = 42.7 bits (99), Expect(2) = 4e-16
Identities = 18/42 (42%), Positives = 29/42 (68%)
Frame = -3
Query: 404 DRILRPGGRAYIRDSLAIMDELVEIAKAIGWQATVRDTSEGP 279
DRILRP G A IRD++ ++ ++ IAK + W++ + D +GP
Sbjct: 571 DRILRPEGTAIIRDTVDVLTKVQAIAKRMRWESRILDHEDGP 612
>ref|NP_030521.1| expressed protein; protein id: At2g39750.1, supported by cDNA:
gi_15450748 [Arabidopsis thaliana]
gi|7487696|pir||T01005 hypothetical protein At2g39750
[imported] - Arabidopsis thaliana
gi|2642157|gb|AAB87124.1| expressed protein [Arabidopsis
thaliana] gi|15450749|gb|AAK96646.1| At2g39750/T5I7.5
[Arabidopsis thaliana] gi|21700885|gb|AAM70566.1|
At2g39750/T5I7.5 [Arabidopsis thaliana]
Length = 694
Score = 76.6 bits (187), Expect(2) = 8e-14
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = -3
Query: 455 FLWRRKDAMCHQLCSRWDRILRPGGRAYIRDSLAIMDELVEIAKAIGWQATVRDTSEGPH 276
F RK + DRILRPGGRAYIRDS+ +MDE+ EI KA+GW ++RDTSEGPH
Sbjct: 620 FSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSLRDTSEGPH 679
Query: 275 A 273
A
Sbjct: 680 A 680
Score = 70.9 bits (172), Expect = 9e-12
Identities = 28/38 (73%), Positives = 34/38 (88%)
Frame = -2
Query: 519 DWCEPFDTYPRTYDLLHAANLLSVEKKRCNVSSIMLEM 406
DWCEPFDTYPRTYD LHA+ L S+E+KRC +S+I+LEM
Sbjct: 599 DWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEM 636
Score = 21.2 bits (43), Expect(2) = 8e-14
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 271 SNRVLVCDKHLLR 233
S R+L C+K LLR
Sbjct: 681 SYRILTCEKRLLR 693
>gb|AAL86466.1|AC077693_5 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 686
Score = 58.5 bits (140), Expect(2) = 2e-13
Identities = 23/38 (60%), Positives = 29/38 (75%)
Frame = -2
Query: 519 DWCEPFDTYPRTYDLLHAANLLSVEKKRCNVSSIMLEM 406
DWCE F TYPRTYDL+HA L S+ + +CN+ I+LEM
Sbjct: 584 DWCEAFSTYPRTYDLIHANGLFSLYQNKCNMEDILLEM 621
Score = 38.1 bits (87), Expect(2) = 2e-13
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -3
Query: 404 DRILRPGGRAYIRDSLAIMDELVEIAKAIGWQATVRDTSEGPH 276
DRILRP G +RD++ +++++ + W++ + D +GPH
Sbjct: 622 DRILRPEGAVILRDNVEVLNKVRRTVMGMRWKSKLLDHEDGPH 664
>ref|NP_565153.1| expressed protein; protein id: At1g77260.1, supported by cDNA:
gi_14194106, supported by cDNA: gi_20334725 [Arabidopsis
thaliana] gi|14194107|gb|AAK56248.1|AF367259_1
At1g77260/T14N5_19 [Arabidopsis thaliana]
gi|20334726|gb|AAM16224.1| At1g77260/T14N5_19
[Arabidopsis thaliana]
Length = 655
Score = 76.3 bits (186), Expect = 2e-13
Identities = 32/38 (84%), Positives = 36/38 (94%)
Frame = -2
Query: 519 DWCEPFDTYPRTYDLLHAANLLSVEKKRCNVSSIMLEM 406
DWCEPFDTYPRTYDL+HAA L SVEKKRCN+++IMLEM
Sbjct: 563 DWCEPFDTYPRTYDLIHAAFLFSVEKKRCNITNIMLEM 600
Score = 74.7 bits (182), Expect = 6e-13
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -3
Query: 485 PMIYCMLPTYFLWRRKDAMCH--QLCSRWDRILRPGGRAYIRDSLAIMDELVEIAKAIGW 312
P Y ++ FL+ + C+ + DR+LRPGG YIRDSL++MD+L ++AKAIGW
Sbjct: 572 PRTYDLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGW 631
Query: 311 QATVRDTSEGPHA 273
A V DT EGPHA
Sbjct: 632 TAGVHDTGEGPHA 644
>pir||T00454 hypothetical protein T14N5.11 - Arabidopsis thaliana
gi|3540206|gb|AAC34356.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 1250
Score = 76.3 bits (186), Expect = 2e-13
Identities = 32/38 (84%), Positives = 36/38 (94%)
Frame = -2
Query: 519 DWCEPFDTYPRTYDLLHAANLLSVEKKRCNVSSIMLEM 406
DWCEPFDTYPRTYDL+HAA L SVEKKRCN+++IMLEM
Sbjct: 563 DWCEPFDTYPRTYDLIHAAFLFSVEKKRCNITNIMLEM 600
Score = 74.7 bits (182), Expect = 6e-13
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -3
Query: 485 PMIYCMLPTYFLWRRKDAMCH--QLCSRWDRILRPGGRAYIRDSLAIMDELVEIAKAIGW 312
P Y ++ FL+ + C+ + DR+LRPGG YIRDSL++MD+L ++AKAIGW
Sbjct: 572 PRTYDLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGW 631
Query: 311 QATVRDTSEGPHA 273
A V DT EGPHA
Sbjct: 632 TAGVHDTGEGPHA 644
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,340,691
Number of Sequences: 1393205
Number of extensions: 8953793
Number of successful extensions: 20195
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 19387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20190
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
