Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005904A_C02 KMC005904A_c02
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD51282.1|AF159587_1 far-red impaired response protein [Arab... 59 5e-08
ref|NP_567455.1| Expressed protein; protein id: At4g15090.1, sup... 59 5e-08
ref|NP_188856.2| far-red impaired response protein, putative; pr... 55 4e-07
pir||F71414 hypothetical protein - Arabidopsis thaliana gi|22448... 54 1e-06
ref|NP_609938.1| CG10493-PA [Drosophila melanogaster] gi|7298532... 35 0.80
>gb|AAD51282.1|AF159587_1 far-red impaired response protein [Arabidopsis thaliana]
Length = 827
Score = 58.5 bits (140), Expect = 5e-08
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = -3
Query: 552 VNQQSMQGLGPLSSMAPSHDGFFGTQHSIHGLGGPLEFRPATSFGYSLQDDE-PDPQFHG 376
V+Q+++QGLG L+S+AP+ D FF Q ++ G+ G ++FRP +F Y+LQ++ Q G
Sbjct: 762 VDQRTIQGLGQLNSIAPAQDSFFTNQQAMSGMVGQIDFRPPPNFTYTLQEEHLSSAQLPG 821
Query: 375 HSSR 364
SSR
Sbjct: 822 SSSR 825
>ref|NP_567455.1| Expressed protein; protein id: At4g15090.1, supported by cDNA:
gi_19310413, supported by cDNA: gi_5764394 [Arabidopsis
thaliana]
Length = 768
Score = 58.5 bits (140), Expect = 5e-08
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = -3
Query: 552 VNQQSMQGLGPLSSMAPSHDGFFGTQHSIHGLGGPLEFRPATSFGYSLQDDE-PDPQFHG 376
V+Q+++QGLG L+S+AP+ D FF Q ++ G+ G ++FRP +F Y+LQ++ Q G
Sbjct: 703 VDQRTIQGLGQLNSIAPAQDSFFTNQQAMSGMVGQIDFRPPPNFTYTLQEEHLSSAQLPG 762
Query: 375 HSSR 364
SSR
Sbjct: 763 SSSR 766
>ref|NP_188856.2| far-red impaired response protein, putative; protein id:
At3g22170.1 [Arabidopsis thaliana]
gi|11994736|dbj|BAB03065.1| far-red impaired response
protein; Mutator-like transposase-like protein;
phytochrome A signaling protein-like [Arabidopsis
thaliana]
Length = 839
Score = 55.5 bits (132), Expect = 4e-07
Identities = 31/66 (46%), Positives = 43/66 (64%), Gaps = 2/66 (3%)
Frame = -3
Query: 549 NQQSMQGLGPLSSMAPSHDGFFGTQHSIHGLGGPLEFRPATSFGYSLQDDE--PDPQFHG 376
NQQ+MQGL L+S+APS+D ++G Q IHG G FRPA +F Y ++DD Q H
Sbjct: 776 NQQTMQGLRQLNSIAPSYDSYYGPQQGIHGQGVDF-FRPA-NFSYDIRDDPNVRTTQLHE 833
Query: 375 HSSRNT 358
+SR++
Sbjct: 834 DASRHS 839
>pir||F71414 hypothetical protein - Arabidopsis thaliana
gi|2244866|emb|CAB10288.1| hypothetical protein
[Arabidopsis thaliana] gi|7268255|emb|CAB78551.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1705
Score = 53.9 bits (128), Expect = 1e-06
Identities = 23/47 (48%), Positives = 35/47 (73%)
Frame = -3
Query: 546 QQSMQGLGPLSSMAPSHDGFFGTQHSIHGLGGPLEFRPATSFGYSLQ 406
QQ++QGLG L+S+AP+ D FF Q ++ G+ G ++FRP +F Y+LQ
Sbjct: 690 QQNVQGLGQLNSIAPAQDSFFTNQQAMSGMVGQIDFRPPPNFTYTLQ 736
>ref|NP_609938.1| CG10493-PA [Drosophila melanogaster] gi|7298532|gb|AAF53751.1|
CG10493-PA [Drosophila melanogaster]
Length = 954
Score = 34.7 bits (78), Expect = 0.80
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = -3
Query: 456 GGPLEFRPATSFGYSLQDDEPDPQFHGHSSRNT*KLSLL*YGSFLR 319
G L F+ A S+GY+L D +P P+FHG + + + + +GS R
Sbjct: 860 GSALSFQQAHSYGYNLFDAKPRPKFHGGTVKRSAGPNSAYFGSLQR 905
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,634,582
Number of Sequences: 1393205
Number of extensions: 8911396
Number of successful extensions: 17638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17631
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
