Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005813A_C01 KMC005813A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568628.1| Expressed protein; protein id: At5g43745.1, sup... 155 3e-37
gb|AAL32724.1| Unknown protein [Arabidopsis thaliana] gi|2025981... 155 3e-37
ref|NP_195914.1| putative protein; protein id: At5g02940.1 [Arab... 150 1e-35
gb|AAL36360.1| unknown protein [Arabidopsis thaliana] 150 1e-35
gb|AAN06856.1| Unknown protein [Oryza sativa (japonica cultivar-... 125 4e-28
>ref|NP_568628.1| Expressed protein; protein id: At5g43745.1, supported by cDNA:
gi_15450497, supported by cDNA: gi_16974322 [Arabidopsis
thaliana] gi|15450498|gb|AAK96542.1| AT5g02940/F9G14_250
[Arabidopsis thaliana] gi|16974323|gb|AAL31146.1|
AT5g02940/F9G14_250 [Arabidopsis thaliana]
Length = 817
Score = 155 bits (393), Expect = 3e-37
Identities = 74/89 (83%), Positives = 83/89 (93%)
Frame = -2
Query: 629 LNEVWKDVLNADGDEIYVKDIGLYMKEGENPSFTELSERAYLRREVAIGYVKNNKNVINP 450
LNEVWKD+L+ADGDEIYVKD+ LYMKEGENPSFTELSERA+LRREVAIGY+K K +INP
Sbjct: 729 LNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKMINP 788
Query: 449 VPKSEPLSLEMTDSLIVISELEGEQPVVL 363
VPK+EPLSLEM DSLIVISELEG+QP+ L
Sbjct: 789 VPKNEPLSLEMDDSLIVISELEGDQPITL 817
>gb|AAL32724.1| Unknown protein [Arabidopsis thaliana] gi|20259818|gb|AAM13256.1|
unknown protein [Arabidopsis thaliana]
Length = 470
Score = 155 bits (393), Expect = 3e-37
Identities = 74/89 (83%), Positives = 83/89 (93%)
Frame = -2
Query: 629 LNEVWKDVLNADGDEIYVKDIGLYMKEGENPSFTELSERAYLRREVAIGYVKNNKNVINP 450
LNEVWKD+L+ADGDEIYVKD+ LYMKEGENPSFTELSERA+LRREVAIGY+K K +INP
Sbjct: 382 LNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKMINP 441
Query: 449 VPKSEPLSLEMTDSLIVISELEGEQPVVL 363
VPK+EPLSLEM DSLIVISELEG+QP+ L
Sbjct: 442 VPKNEPLSLEMDDSLIVISELEGDQPITL 470
>ref|NP_195914.1| putative protein; protein id: At5g02940.1 [Arabidopsis thaliana]
gi|11281135|pir||T48315 hypothetical protein F9G14.250 -
Arabidopsis thaliana gi|7413569|emb|CAB86048.1| putative
protein [Arabidopsis thaliana]
Length = 776
Score = 150 bits (380), Expect = 1e-35
Identities = 72/89 (80%), Positives = 82/89 (91%)
Frame = -2
Query: 629 LNEVWKDVLNADGDEIYVKDIGLYMKEGENPSFTELSERAYLRREVAIGYVKNNKNVINP 450
LNEVWKD+L+A+GDEIYVKDI LYMKEGENPSFTELSERA+LRREVAIGY+K K +INP
Sbjct: 688 LNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKIINP 747
Query: 449 VPKSEPLSLEMTDSLIVISELEGEQPVVL 363
VPK+EP+SLEM DSLIVISELEG+Q + L
Sbjct: 748 VPKTEPVSLEMEDSLIVISELEGDQVITL 776
>gb|AAL36360.1| unknown protein [Arabidopsis thaliana]
Length = 813
Score = 150 bits (380), Expect = 1e-35
Identities = 72/89 (80%), Positives = 82/89 (91%)
Frame = -2
Query: 629 LNEVWKDVLNADGDEIYVKDIGLYMKEGENPSFTELSERAYLRREVAIGYVKNNKNVINP 450
LNEVWKD+L+A+GDEIYVKDI LYMKEGENPSFTELSERA+LRREVAIGY+K K +INP
Sbjct: 725 LNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKIINP 784
Query: 449 VPKSEPLSLEMTDSLIVISELEGEQPVVL 363
VPK+EP+SLEM DSLIVISELEG+Q + L
Sbjct: 785 VPKTEPVSLEMEDSLIVISELEGDQVITL 813
>gb|AAN06856.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1293
Score = 125 bits (315), Expect = 4e-28
Identities = 61/84 (72%), Positives = 69/84 (81%)
Frame = -2
Query: 629 LNEVWKDVLNADGDEIYVKDIGLYMKEGENPSFTELSERAYLRREVAIGYVKNNKNVINP 450
LNEVWKD+LNA+GDEIY+K+IG YMKEGE SF+EL+ERA LRREVA+GYVK K INP
Sbjct: 751 LNEVWKDILNAEGDEIYIKEIGFYMKEGEKISFSELTERAILRREVAVGYVKGKKQYINP 810
Query: 449 VPKSEPLSLEMTDSLIVISELEGE 378
K E LS EMTD LIVISE EG+
Sbjct: 811 TNKLELLSFEMTDQLIVISEFEGQ 834
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,502,616
Number of Sequences: 1393205
Number of extensions: 10492751
Number of successful extensions: 21000
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20997
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
