Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005811A_C01 KMC005811A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_440446.1| ComE [Synechocystis sp. PCC 6803] gi|7469291|pi... 32 3.6
ref|NP_609848.1| CG15143-PA [Drosophila melanogaster] gi|2294671... 32 6.2
gb|AAM11011.1| AT22189p [Drosophila melanogaster] 32 6.2
ref|XP_160394.1| hypothetical protein XP_160394 [Mus musculus] 31 8.1
>ref|NP_440446.1| ComE [Synechocystis sp. PCC 6803] gi|7469291|pir||S75212 comE
protein - Synechocystis sp. (strain PCC 6803)
gi|1652202|dbj|BAA17126.1| ComE [Synechocystis sp. PCC
6803]
Length = 709
Score = 32.3 bits (72), Expect = 3.6
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 176 AVPSPGIVYNFCIVISGLMYVLTWTWPLN*LLVPELVCGSLGGMYRTDILLIYP 15
AVP V+ I++ Y + PLN L+ P L SLGGM LI+P
Sbjct: 395 AVPLAASVWTTPILLQQFGYFIPAALPLNILITPLLALLSLGGMVSALCALIFP 448
>ref|NP_609848.1| CG15143-PA [Drosophila melanogaster] gi|22946718|gb|AAF53627.2|
CG15143-PA [Drosophila melanogaster]
Length = 1152
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 435 RSTLGMLAKRKGDNLKDGLQNFKGPLKGSM 346
+ L +L KRK DN+ LQNF PL G +
Sbjct: 803 KQLLNILRKRKEDNITRNLQNFDNPLAGEI 832
>gb|AAM11011.1| AT22189p [Drosophila melanogaster]
Length = 1152
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 435 RSTLGMLAKRKGDNLKDGLQNFKGPLKGSM 346
+ L +L KRK DN+ LQNF PL G +
Sbjct: 803 KQLLNILRKRKEDNITRNLQNFDNPLAGEI 832
>ref|XP_160394.1| hypothetical protein XP_160394 [Mus musculus]
Length = 185
Score = 31.2 bits (69), Expect = 8.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 46 IPPRLPHTNSGTNNQFKGQVQVKTYIRP-EMTIQKLYTIPGDGTARFTMNFSL 201
+P + N+ TN + + +TY+ P ++ +Q+L+ DG T+NFSL
Sbjct: 104 VPGLVTTENNQTNQESRSLKTAQTYLCPTDLLLQRLFVYATDGRTFKTINFSL 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,228,459
Number of Sequences: 1393205
Number of extensions: 10836031
Number of successful extensions: 20945
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20942
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
