Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005805A_C01 KMC005805A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200350.1| hypothetical protein; protein id: At5g55390.1 [... 101 1e-20
ref|NP_199620.1| putative protein; protein id: At5g48090.1 [Arab... 82 6e-15
ref|NP_007298.1|ND4_10712 NADH dehydrogenase subunit 4 [Locusta ... 39 0.046
ref|NP_048304.1| ORF MSV234 hypthetical protein [Melanoplus sang... 37 0.23
ref|NP_049051.1| unknown [Novosphingobium aromaticivorans] gi|11... 36 0.51
>ref|NP_200350.1| hypothetical protein; protein id: At5g55390.1 [Arabidopsis
thaliana] gi|9758171|dbj|BAB08556.1|
gene_id:MTE17.10~ref|NP_032765.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 1332
Score = 101 bits (251), Expect = 1e-20
Identities = 44/73 (60%), Positives = 59/73 (80%)
Frame = -2
Query: 648 RLEEGCSIEDAKAICEPGIVHQLFVCQKRLKVYLAPFLHGMRYTSYGRHFTKIDKLKEVV 469
+LEEG +IEDAKA+CEP ++ Q+ + +LKVYLAPFLHG RYTS+GRHFT +KL+++V
Sbjct: 663 KLEEGGNIEDAKAVCEPEVLSQILKWKDKLKVYLAPFLHGARYTSFGRHFTNPEKLQQIV 722
Query: 468 DRLHCYVQNGDTV 430
DRLH Y +GD +
Sbjct: 723 DRLHWYADDGDMI 735
>ref|NP_199620.1| putative protein; protein id: At5g48090.1 [Arabidopsis thaliana]
gi|10177760|dbj|BAB11073.1|
gene_id:MDN11.17~ref|NP_032765.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 636
Score = 82.0 bits (201), Expect = 6e-15
Identities = 41/71 (57%), Positives = 55/71 (76%)
Frame = -2
Query: 642 EEGCSIEDAKAICEPGIVHQLFVCQKRLKVYLAPFLHGMRYTSYGRHFTKIDKLKEVVDR 463
EEG DA+A+ +P + QL +K+L++ +PFLHGMRYTS+GRHFT +KLKE+V+R
Sbjct: 367 EEGRD-RDARALFDPDSLLQLMKHKKKLEI--SPFLHGMRYTSFGRHFTNPEKLKEIVER 423
Query: 462 LHCYVQNGDTV 430
LH YV+NGDTV
Sbjct: 424 LHWYVENGDTV 434
>ref|NP_007298.1|ND4_10712 NADH dehydrogenase subunit 4 [Locusta migratoria]
gi|2499265|sp|Q36424|NU4M_LOCMI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 gi|7432350|pir||T11474 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
migratory locust mitochondrion
gi|1182022|emb|CAA56534.1| ND4 [Locusta migratoria]
Length = 444
Score = 39.3 bits (90), Expect = 0.046
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -3
Query: 470 LIGFIVMCKMVT----RYVDVYFGLGFYIFTLIFSSISFPLTFFFLSLLFLSLSHHPSYL 303
L+ FI M + + + YFG+ FY F LI S+ S S S+HP++
Sbjct: 30 LLSFIFMISLYSYSDLSMISYYFGVDFYSFMLILLSLWICCLMITASSSIYSSSYHPNFF 89
Query: 302 SFLSLLFPSLSCECGWNGCELTIFRLLFIYGLIASL 195
F+ LL + C ++ L F + F L+ +L
Sbjct: 90 VFVVLLL-LIMLFCSFSSLNLFSFYIFFESSLVPTL 124
>ref|NP_048304.1| ORF MSV234 hypthetical protein [Melanoplus sanguinipes
entomopoxvirus] gi|11361205|pir||T28394 hypothetical
protein MSV234 [imported] - Melanoplus sanguinipes
entomopoxvirus gi|4049784|gb|AAC97744.1| ORF MSV234
hypthetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 117
Score = 37.0 bits (84), Expect = 0.23
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -1
Query: 403 FIYSHS--FSLPSHFHSLFSSYLFFFYHCHITRHISHFSLF--YFHLSH 269
++Y H FS +FH SY F +H H+ H H F YFHL H
Sbjct: 6 YLYPHFDVFSFHFYFHFHLHSYFHFHHHFHVYFHFHHHHHFHVYFHLHH 54
Score = 33.1 bits (74), Expect = 3.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 391 HSFSLPSHFHSLFSSYLFFFYHCHITRHISHFSLFYFHLSH 269
+ F L HF +FS + +F +H H H H YFH H
Sbjct: 3 YQFYLYPHF-DVFSFHFYFHFHLHSYFHFHHHFHVYFHFHH 42
Score = 32.7 bits (73), Expect = 4.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 436 HGMWMFILVWVFIYSHSFSLPSHFHSLFSSYLFFFYHCHITRHISHFSLFYFHLSH 269
H + F L F + H F + HFH +++F H H H+ YFH H
Sbjct: 17 HFYFHFHLHSYFHFHHHFHVYFHFHHHHHFHVYFHLHHHHHFHVYFHLHSYFHFHH 72
>ref|NP_049051.1| unknown [Novosphingobium aromaticivorans] gi|11361063|pir||T31123
hypothetical protein 15 - Sphingomonas aromaticivorans
plasmid pNL1 gi|3378264|gb|AAD03847.1| unknown
[Novosphingobium aromaticivorans]
Length = 309
Score = 35.8 bits (81), Expect = 0.51
Identities = 16/56 (28%), Positives = 32/56 (56%)
Frame = -3
Query: 422 VYFGLGFYIFTLIFSSISFPLTFFFLSLLFLSLSHHPSYLSFLSLLFPSLSCECGW 255
+YFG G+ +F L F + +T F ++++F+ L HHP+ ++ + + + GW
Sbjct: 179 IYFGFGWELFMLWF--VPSRITLFIIAIVFVILPHHPAIIAQDEDPYMATTMRFGW 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,304,154
Number of Sequences: 1393205
Number of extensions: 12808546
Number of successful extensions: 38878
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 35980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38718
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
