Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005789A_C01 KMC005789A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC03254.1| P0490D09.6 [Oryza sativa (japonica cultivar-group)] 57 9e-08
ref|NP_197485.1| hypothetical protein; protein id: At5g19840.1 [... 54 1e-06
gb|EAA26050.1| unknown [Rickettsia sibirica] 35 0.36
ref|NP_360883.1| unknown [Rickettsia conorii] gi|25305448|pir||F... 35 0.36
gb|ZP_00003915.1| hypothetical protein [Nitrosomonas europaea] 33 1.8
>dbj|BAC03254.1| P0490D09.6 [Oryza sativa (japonica cultivar-group)]
Length = 554
Score = 57.4 bits (137), Expect = 9e-08
Identities = 25/47 (53%), Positives = 37/47 (78%)
Frame = -2
Query: 498 FYEVFYSVFDDQSAAMNSILKGKESFNQQAFKNVLDKFVGVNLESSK 358
FY+ FYSVFDDQ AAM+++L GKE F+ Q F++VL +++GV+ + K
Sbjct: 508 FYKTFYSVFDDQYAAMDALLNGKEMFSFQVFQSVLRQYIGVHADRPK 554
>ref|NP_197485.1| hypothetical protein; protein id: At5g19840.1 [Arabidopsis
thaliana]
Length = 399
Score = 53.9 bits (128), Expect = 1e-06
Identities = 26/39 (66%), Positives = 32/39 (81%)
Frame = -2
Query: 480 SVFDDQSAAMNSILKGKESFNQQAFKNVLDKFVGVNLES 364
S FDD++AAM+ IL KE+F QAFKNVLDKF+GVN+ S
Sbjct: 356 SAFDDEAAAMDIILSRKEAFAFQAFKNVLDKFLGVNIAS 394
>gb|EAA26050.1| unknown [Rickettsia sibirica]
Length = 445
Score = 35.4 bits (80), Expect = 0.36
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 8/48 (16%)
Frame = +1
Query: 61 SKETTRWGQIINT--------KVFHLAKLIQHINQIPRIQLVLYTTEH 180
+KE GQ +N K+F LA L++H+ QIP ++ + YTT H
Sbjct: 198 AKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLERLRYTTSH 245
>ref|NP_360883.1| unknown [Rickettsia conorii] gi|25305448|pir||F97855 hypothetical
protein RC1246 [imported] - Rickettsia conorii (strain
Malish 7) gi|15620380|gb|AAL03784.1| unknown [Rickettsia
conorii]
Length = 445
Score = 35.4 bits (80), Expect = 0.36
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 8/48 (16%)
Frame = +1
Query: 61 SKETTRWGQIINT--------KVFHLAKLIQHINQIPRIQLVLYTTEH 180
+KE GQ +N K+F LA L++H+ QIP ++ + YTT H
Sbjct: 198 AKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLERLRYTTSH 245
>gb|ZP_00003915.1| hypothetical protein [Nitrosomonas europaea]
Length = 443
Score = 33.1 bits (74), Expect = 1.8
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 82 GQIINTKVFHLAKLIQHINQIPRIQLVLYTTEH 180
G++IN ++ A L+ +I++IP I+ + YTT H
Sbjct: 208 GKMINGEIADFATLLDYIHEIPGIERIRYTTSH 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,808,006
Number of Sequences: 1393205
Number of extensions: 8189601
Number of successful extensions: 15583
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15580
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
