Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005788A_C01 KMC005788A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97165.1| putative oxysterol binding protein [Oryza sativa ... 168 5e-45
gb|AAM98072.1| AT4g08180/T12G13_20 [Arabidopsis thaliana] 163 6e-42
ref|NP_180659.1| putative oxysterol-binding protein; protein id:... 159 7e-41
gb|AAK15443.1|AC037426_5 putative oxysterol-binding protein [Ory... 165 3e-40
ref|NP_192558.1| putative protein; protein id: At4g08180.1 [Arab... 152 8e-39
>gb|AAM97165.1| putative oxysterol binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 772
Score = 168 bits (425), Expect(2) = 5e-45
Identities = 77/91 (84%), Positives = 85/91 (92%)
Frame = -1
Query: 491 RYNFTRFAITLNELTPGLKEKLPPTDXRLRPDQRYLENGQYEMANSEKLRLEQRQRQARK 312
RYNFTRFAITLNELT GLKEKLPPTD RLRPDQR LENG+YE AN+EKLRLEQRQRQARK
Sbjct: 660 RYNFTRFAITLNELTAGLKEKLPPTDSRLRPDQRCLENGEYERANAEKLRLEQRQRQARK 719
Query: 311 MQESGWKPQWFARDKETGSYRFLGGYWEARK 219
MQESGWKP+WFA+DK T +YR+LGGYWE+R+
Sbjct: 720 MQESGWKPRWFAKDKATDTYRYLGGYWESRE 750
Score = 34.3 bits (77), Expect(2) = 5e-45
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 238 GIGRPEKPGNWNSCPDIFGQIPPD 167
G + G+W CPDIFGQ+P D
Sbjct: 744 GYWESREKGSWEGCPDIFGQVPND 767
>gb|AAM98072.1| AT4g08180/T12G13_20 [Arabidopsis thaliana]
Length = 814
Score = 163 bits (412), Expect(2) = 6e-42
Identities = 73/91 (80%), Positives = 84/91 (92%)
Frame = -1
Query: 491 RYNFTRFAITLNELTPGLKEKLPPTDXRLRPDQRYLENGQYEMANSEKLRLEQRQRQARK 312
+YN TRFAITLNELTPGLKE+LPPTD RLRPDQRYLENG++EMAN+EKLRLEQRQRQARK
Sbjct: 702 KYNLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKLRLEQRQRQARK 761
Query: 311 MQESGWKPQWFARDKETGSYRFLGGYWEARK 219
MQE GWKP+WF ++K + SYR+ GGYWEAR+
Sbjct: 762 MQERGWKPRWFMKEKGSESYRYKGGYWEARE 792
Score = 28.9 bits (63), Expect(2) = 6e-42
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = -2
Query: 238 GIGRPEKPGNWNSCPDIFGQIPPD 167
G + G+W CPDIFG I D
Sbjct: 786 GYWEAREDGSWVDCPDIFGHIDSD 809
>ref|NP_180659.1| putative oxysterol-binding protein; protein id: At2g31020.1
[Arabidopsis thaliana] gi|25295692|pir||E84715 probable
oxysterol-binding protein [imported] - Arabidopsis
thaliana gi|3201627|gb|AAC20736.1| putative
oxysterol-binding protein [Arabidopsis thaliana]
Length = 760
Score = 159 bits (401), Expect(2) = 7e-41
Identities = 70/90 (77%), Positives = 81/90 (89%)
Frame = -1
Query: 491 RYNFTRFAITLNELTPGLKEKLPPTDXRLRPDQRYLENGQYEMANSEKLRLEQRQRQARK 312
+YN TRF ITLNELTPGLKEKLPPTD RLRPDQRYLE G+YEM N+EKLRLEQRQRQAR+
Sbjct: 651 KYNLTRFGITLNELTPGLKEKLPPTDSRLRPDQRYLEKGEYEMGNAEKLRLEQRQRQARE 710
Query: 311 MQESGWKPQWFARDKETGSYRFLGGYWEAR 222
MQE GWKP+WF ++K + +YR++GGYWEAR
Sbjct: 711 MQERGWKPKWFRKEKGSETYRYIGGYWEAR 740
Score = 29.6 bits (65), Expect(2) = 7e-41
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 214 GNWNSCPDIFGQI 176
G+W+ CPDIFGQ+
Sbjct: 743 GSWDDCPDIFGQV 755
>gb|AAK15443.1|AC037426_5 putative oxysterol-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 742
Score = 165 bits (417), Expect = 3e-40
Identities = 75/94 (79%), Positives = 84/94 (88%)
Frame = -1
Query: 491 RYNFTRFAITLNELTPGLKEKLPPTDXRLRPDQRYLENGQYEMANSEKLRLEQRQRQARK 312
RYN + FAITLNELTPGLKEKLPPTD RLRPDQR+LENG+YE ANSEKLRLE RQR ARK
Sbjct: 628 RYNLSSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANSEKLRLETRQRMARK 687
Query: 311 MQESGWKPQWFARDKETGSYRFLGGYWEARKARK 210
MQESGWKP+WF RD E G++R++GGYWEAR+ RK
Sbjct: 688 MQESGWKPRWFQRDTEDGTFRYVGGYWEAREQRK 721
>ref|NP_192558.1| putative protein; protein id: At4g08180.1 [Arabidopsis thaliana]
gi|7486872|pir||T10545 hypothetical protein T12G13.20 -
Arabidopsis thaliana gi|5262191|emb|CAB45788.1| putative
protein [Arabidopsis thaliana] gi|7267458|emb|CAB81154.1|
putative protein [Arabidopsis thaliana]
Length = 830
Score = 152 bits (385), Expect(2) = 8e-39
Identities = 73/107 (68%), Positives = 84/107 (78%), Gaps = 16/107 (14%)
Frame = -1
Query: 491 RYNFTRFAITLNELTPGLKEKLPPTDXRLRPDQRYLENGQYEMANSEKLRLEQRQ----- 327
+YN TRFAITLNELTPGLKE+LPPTD RLRPDQRYLENG++EMAN+EKLRLEQRQ
Sbjct: 702 KYNLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKLRLEQRQRQNEL 761
Query: 326 -----------RQARKMQESGWKPQWFARDKETGSYRFLGGYWEARK 219
RQARKMQE GWKP+WF ++K + SYR+ GGYWEAR+
Sbjct: 762 ELTCYKLGCVMRQARKMQERGWKPRWFMKEKGSESYRYKGGYWEARE 808
Score = 28.9 bits (63), Expect(2) = 8e-39
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = -2
Query: 238 GIGRPEKPGNWNSCPDIFGQIPPD 167
G + G+W CPDIFG I D
Sbjct: 802 GYWEAREDGSWVDCPDIFGHIDSD 825
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,338,555
Number of Sequences: 1393205
Number of extensions: 8839356
Number of successful extensions: 19920
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 19376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19839
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
