Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005784A_C01 KMC005784A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q41229|PSE2_NICSY Photosystem I reaction center subunit IV B,... 176 2e-43
emb|CAD29821.2| putative photosystem I reaction centre subunit I... 174 5e-43
pir||T15056 photosystem I chain IV - wood tobacco gi|1217601|dbj... 170 1e-41
sp|Q41228|PSE1_NICSY Photosystem I reaction center subunit IV A,... 167 7e-41
sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, c... 161 5e-39
>sp|Q41229|PSE2_NICSY Photosystem I reaction center subunit IV B, chloroplast precursor
(PSI-E B) gi|7443147|pir||T16963 photosystem I chain
PSI-E, isoform b - wood tobacco gi|632724|gb|AAB31705.1|
photosystem I subunit PSI-E [Nicotiana sylvestris]
Length = 143
Score = 176 bits (445), Expect = 2e-43
Identities = 100/143 (69%), Positives = 113/143 (78%), Gaps = 7/143 (4%)
Frame = -3
Query: 542 ASMASAASGFVMSL-NIAGGTTTNNTSASRVMFPSVGKINGS----RLVVRAADEAAAPA 378
+SMASAASGF+++ NIA T TS ++F S K N + RLVVRAA+EAA PA
Sbjct: 4 SSMASAASGFMVATPNIATSNTAPRTS---MLFFSSSKNNTTTNFPRLVVRAAEEAAPPA 60
Query: 377 TATPTAEGDAAPKP--KPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVV 204
AT TAEG+A P KPPPIGPKRG+KV++LRKESYWYKG GSVVAVDQDP TRYPVVV
Sbjct: 61 -ATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVV 119
Query: 203 RFNKVNYANVSTNNYALDEIEEV 135
RFNKVNYANVSTNNYALDE+EEV
Sbjct: 120 RFNKVNYANVSTNNYALDEVEEV 142
>emb|CAD29821.2| putative photosystem I reaction centre subunit IV [Populus
euramericana]
Length = 140
Score = 174 bits (442), Expect = 5e-43
Identities = 93/137 (67%), Positives = 107/137 (77%), Gaps = 2/137 (1%)
Frame = -3
Query: 539 SMASAASGFVMSLNIAGGTTTNNTSASRVMFPSV--GKINGSRLVVRAADEAAAPATATP 366
+MASAASGF ++ +A T TN+TS ++F S N SRLVVR+A+E A+P AT
Sbjct: 5 NMASAASGFALTPAVA--TNTNSTSKPTMLFFSSKNNNKNYSRLVVRSAEEGASPPAATT 62
Query: 365 TAEGDAAPKPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVN 186
APKPKPPPIGPKRG+KVKILRKESYW+ G GSV AVDQDP++RYPVVVRFNKVN
Sbjct: 63 EPAVAEAPKPKPPPIGPKRGTKVKILRKESYWFNGFGSVAAVDQDPRSRYPVVVRFNKVN 122
Query: 185 YANVSTNNYALDEIEEV 135
YANVSTNNYALDEIEEV
Sbjct: 123 YANVSTNNYALDEIEEV 139
>pir||T15056 photosystem I chain IV - wood tobacco gi|1217601|dbj|BAA07667.1|
PSI-E subunit of photosystem I [Nicotiana sylvestris]
Length = 147
Score = 170 bits (430), Expect = 1e-41
Identities = 100/147 (68%), Positives = 113/147 (76%), Gaps = 11/147 (7%)
Frame = -3
Query: 542 ASMASAASGFVMSL-NIAGGTTTNNTSASRVMFPSVGKINGS----RLVVRAADEAAAPA 378
+SMASAASGF+++ NIA T TS ++F S K N + RLVVRAA+EAA PA
Sbjct: 4 SSMASAASGFMVATPNIATSNTAPRTS---MLFFSSSKNNTTTNFPRLVVRAAEEAAPPA 60
Query: 377 TATPTAEGDAAPKP--KPPPIGPKRGSKV----KILRKESYWYKGTGSVVAVDQDPKTRY 216
AT TAEG+A P KPPPIGPKRG+KV ++LRKESYWYKG GSVVAVDQDP TRY
Sbjct: 61 -ATATAEGEAPPAKAAKPPPIGPKRGTKVSTPVRVLRKESYWYKGVGSVVAVDQDPNTRY 119
Query: 215 PVVVRFNKVNYANVSTNNYALDEIEEV 135
PVVVRFNKVNYANVSTNNYALDE+EEV
Sbjct: 120 PVVVRFNKVNYANVSTNNYALDEVEEV 146
>sp|Q41228|PSE1_NICSY Photosystem I reaction center subunit IV A, chloroplast precursor
(PSI-E A) gi|7443146|pir||T16962 photosystem I chain
PSI-E - wood tobacco gi|632722|gb|AAB31704.1|
photosystem I subunit PSI-E [Nicotiana sylvestris]
Length = 141
Score = 167 bits (424), Expect = 7e-41
Identities = 94/138 (68%), Positives = 105/138 (75%), Gaps = 3/138 (2%)
Frame = -3
Query: 539 SMASAASGFVMSL-NIAGGTTTNNTSASRVMFPSVGKINGSRLVVRAADEAAAPATATPT 363
+MASAAS F+++ N+A T T+ T+ + G RLVVRAA+EAA PA A T
Sbjct: 5 NMASAASNFLVATPNVASNTNTSRTTMLFFSSKNYGS-TAPRLVVRAAEEAAPPAAAA-T 62
Query: 362 AEGDAAP--KPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKV 189
AE AP KPPPIGPKRG+KV+ILRKESYWYKGTGSVVA DQDP TRYPVVVRFNKV
Sbjct: 63 AEPAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKV 122
Query: 188 NYANVSTNNYALDEIEEV 135
NYANVSTNNYALDEIEEV
Sbjct: 123 NYANVSTNNYALDEIEEV 140
>sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, chloroplast precursor
(PSI-E) gi|72682|pir||F1SP4 photosystem I chain IV
precursor - spinach gi|21295|emb|CAA32183.1| subunit III
preprotein (AA -34 to 91) [Spinacia oleracea]
Length = 125
Score = 161 bits (408), Expect = 5e-39
Identities = 90/136 (66%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Frame = -3
Query: 536 MASAASGFVMSLNIAGGTTTNNTSASRVMFPSVGKINGSRLVVRAADEAAA-PATATPTA 360
MAS AS + L + N S+ R +RLVVRAA+EAAA PA A+P
Sbjct: 1 MASIASSVAVRLGLTQVLPNKNFSSPR----------STRLVVRAAEEAAAAPAAASPEG 50
Query: 359 EGDAAPKPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYA 180
E A KPPPIGPKRGSKV+I+RKESYWYKG GSVVAVDQDPKTRYPVVVRFNKVNYA
Sbjct: 51 EAPKAAA-KPPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYA 109
Query: 179 NVSTNNYALDEIEEVA 132
NVSTNNYALDEI+EVA
Sbjct: 110 NVSTNNYALDEIQEVA 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,494,200
Number of Sequences: 1393205
Number of extensions: 12215995
Number of successful extensions: 64665
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 52339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63136
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
