Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005775A_C01 KMC005775A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF80591.1|AF223420_1 xyloglucan endotransglycosylase XET2 [A... 160 9e-39
gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica] 155 3e-37
emb|CAA10231.1| xyloglucan endotransglycosylase 1 [Fagus sylvatica] 151 4e-36
dbj|BAB86890.1| syringolide-induced protein 19-1-5 [Glycine max] 146 2e-34
ref|NP_200564.1| xyloglucan endotransglycosylase (TCH4); protein... 141 6e-33
>gb|AAF80591.1|AF223420_1 xyloglucan endotransglycosylase XET2 [Asparagus officinalis]
Length = 284
Score = 160 bits (405), Expect = 9e-39
Identities = 75/105 (71%), Positives = 85/105 (80%)
Frame = -3
Query: 531 NADDWATRGGLVKTDWTQAPFTASYRNFNAQACVWSSSSGSSCSSSKKSPSSSSSSSSSQ 352
NADDWATRGGL+KTDWT+APFTASYRNFNA ACVW S+G+S SSKKSPS+S S+
Sbjct: 186 NADDWATRGGLIKTDWTKAPFTASYRNFNANACVW--SAGTSTCSSKKSPSASPSN---- 239
Query: 351 SWLRESLDANGQAKIRWAQKNYMIYNYCTDTKRFPQGSPPECSFA 217
+WL E LD+ Q ++RW QKNYMIYNYC D KRFPQG PPECS A
Sbjct: 240 AWLNEELDSTRQERMRWVQKNYMIYNYCADLKRFPQGLPPECSVA 284
>gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica]
Length = 282
Score = 155 bits (392), Expect = 3e-37
Identities = 75/105 (71%), Positives = 83/105 (78%)
Frame = -3
Query: 531 NADDWATRGGLVKTDWTQAPFTASYRNFNAQACVWSSSSGSSCSSSKKSPSSSSSSSSSQ 352
NADDWATRGGLVKTDW++APFTASYRNFNAQAC WSS + S C S KSP+ SS
Sbjct: 188 NADDWATRGGLVKTDWSKAPFTASYRNFNAQACTWSSGT-SRCPS--KSPNESS------ 238
Query: 351 SWLRESLDANGQAKIRWAQKNYMIYNYCTDTKRFPQGSPPECSFA 217
WL +SLD+ GQ +I+W QKNYMIYNYC DTKRFPQG PPECS A
Sbjct: 239 -WLTQSLDSTGQERIKWVQKNYMIYNYCRDTKRFPQGFPPECSAA 282
>emb|CAA10231.1| xyloglucan endotransglycosylase 1 [Fagus sylvatica]
Length = 292
Score = 151 bits (382), Expect = 4e-36
Identities = 67/103 (65%), Positives = 84/103 (81%)
Frame = -3
Query: 531 NADDWATRGGLVKTDWTQAPFTASYRNFNAQACVWSSSSGSSCSSSKKSPSSSSSSSSSQ 352
NADDWATRGGL+KTDW + PFTASYRNFNA+AC+WSS S+C+++ S SS+S++
Sbjct: 192 NADDWATRGGLLKTDWARTPFTASYRNFNARACLWSSGE-STCTAN-----SQSSTSNNN 245
Query: 351 SWLRESLDANGQAKIRWAQKNYMIYNYCTDTKRFPQGSPPECS 223
+WL+E LD Q +++W QKNYMIYNYCTDTKRFPQG PPEC+
Sbjct: 246 AWLKEDLDFTRQERLKWVQKNYMIYNYCTDTKRFPQGFPPECA 288
>dbj|BAB86890.1| syringolide-induced protein 19-1-5 [Glycine max]
Length = 285
Score = 146 bits (368), Expect = 2e-34
Identities = 69/105 (65%), Positives = 81/105 (76%)
Frame = -3
Query: 531 NADDWATRGGLVKTDWTQAPFTASYRNFNAQACVWSSSSGSSCSSSKKSPSSSSSSSSSQ 352
NADDWATRGGLVKTDWTQAPFTASYRNFNA AC SS + SSC S++ SSS++
Sbjct: 188 NADDWATRGGLVKTDWTQAPFTASYRNFNANACTMSSGT-SSCG------SNNPSSSNNN 240
Query: 351 SWLRESLDANGQAKIRWAQKNYMIYNYCTDTKRFPQGSPPECSFA 217
WL E LD+ Q +++W QKNYMIYNYC+DT+RFPQG P EC+ A
Sbjct: 241 VWLSEELDSTDQERLKWVQKNYMIYNYCSDTQRFPQGLPSECNTA 285
>ref|NP_200564.1| xyloglucan endotransglycosylase (TCH4); protein id: At5g57560.1,
supported by cDNA: gi_14194112, supported by cDNA:
gi_15450688, supported by cDNA: gi_15777882, supported
by cDNA: gi_17386135, supported by cDNA: gi_2952472
[Arabidopsis thaliana] gi|25313554|pir||T52097
xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-)
[imported] - Arabidopsis thaliana
gi|886116|gb|AAA92363.1| TCH4 protein
gi|2952473|gb|AAC05572.1| xyloglucan
endotransglycosylase related protein [Arabidopsis
thaliana] gi|9758317|dbj|BAB08791.1| TCH4 protein
[Arabidopsis thaliana]
gi|14194113|gb|AAK56251.1|AF367262_1 AT5g57560/MUA2_13
[Arabidopsis thaliana] gi|15450689|gb|AAK96616.1|
AT5g57560/MUA2_13 [Arabidopsis thaliana]
gi|15777883|gb|AAL05902.1| AT5g57560/MUA2_13
[Arabidopsis thaliana]
gi|17386136|gb|AAL38614.1|AF446881_1 AT5g57560/MUA2_13
[Arabidopsis thaliana]
Length = 284
Score = 141 bits (355), Expect = 6e-33
Identities = 63/102 (61%), Positives = 77/102 (74%)
Frame = -3
Query: 531 NADDWATRGGLVKTDWTQAPFTASYRNFNAQACVWSSSSGSSCSSSKKSPSSSSSSSSSQ 352
NADDWATRGGLVKTDW++APFTASYR F +ACVWS+ SSC P++S +++
Sbjct: 187 NADDWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGK-SSC------PNASKQGTTTG 239
Query: 351 SWLRESLDANGQAKIRWAQKNYMIYNYCTDTKRFPQGSPPEC 226
SWL + LD+ Q ++RW Q+NYMIYNYCTD KRFPQG P EC
Sbjct: 240 SWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 281
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,864,422
Number of Sequences: 1393205
Number of extensions: 10828648
Number of successful extensions: 122026
Number of sequences better than 10.0: 757
Number of HSP's better than 10.0 without gapping: 54269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88355
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
