Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005759A_C01 KMC005759A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193777.1| putative snRNP protein; protein id: At4g20440.1... 291 5e-78
ref|NP_199263.1| putative protein; protein id: At5g44500.1, supp... 283 1e-75
gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana] 282 2e-75
dbj|BAC07386.1| putative snRNP protein [Oryza sativa (japonica c... 272 2e-72
pir||A35448 small nuclear ribonucleoprotein-associated protein N... 184 5e-46
>ref|NP_193777.1| putative snRNP protein; protein id: At4g20440.1, supported by cDNA:
36005. [Arabidopsis thaliana] gi|7488342|pir||T10586
small nuclear ribonucleoprotein-associated protein
homolog F9F13.90 - Arabidopsis thaliana
gi|5262167|emb|CAB45810.1| putative snRNP protein
[Arabidopsis thaliana] gi|7268840|emb|CAB79044.1|
putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein
[Arabidopsis thaliana] gi|28827492|gb|AAO50590.1|
putative snRNP protein [Arabidopsis thaliana]
Length = 257
Score = 291 bits (744), Expect = 5e-78
Identities = 142/162 (87%), Positives = 155/162 (95%)
Frame = +3
Query: 78 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPS 257
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK +
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 258 DADREDRRTLGLVLLRGEEVVSMTVEGPPPPEESRSKAVNAAALAGPGIGRAAGRGIPAA 437
+ +REDRRTLGLVLLRGEEV+SMTVEGPPPPEESR+KA +AAA+AGPGIGRAAGRG+P
Sbjct: 61 E-EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTG 119
Query: 438 PVIQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLSAPPVSYP 563
P++QAQPGL+GPVRGVGGPAPGMMQPQISRPPQLSAPP+ P
Sbjct: 120 PLVQAQPGLSGPVRGVGGPAPGMMQPQISRPPQLSAPPIIRP 161
>ref|NP_199263.1| putative protein; protein id: At5g44500.1, supported by cDNA:
10879., supported by cDNA: gi_14596136, supported by
cDNA: gi_18377437 [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| contains similarity to small
nuclear ribonucleoprotein~gene_id:MFC16.18 [Arabidopsis
thaliana] gi|14596137|gb|AAK68796.1| Unknown protein
[Arabidopsis thaliana] gi|18377438|gb|AAL66885.1|
unknown protein [Arabidopsis thaliana]
Length = 254
Score = 283 bits (723), Expect = 1e-75
Identities = 133/166 (80%), Positives = 150/166 (90%)
Frame = +3
Query: 78 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPS 257
MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG K +
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 258 DADREDRRTLGLVLLRGEEVVSMTVEGPPPPEESRSKAVNAAALAGPGIGRAAGRGIPAA 437
+ +RE+RRTLGLVLLRGEEV+SMTVEGPPPPEESR+K+ + A+AGPGIGRAAGRG+P
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120
Query: 438 PVIQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLSAPPVSYPSNAP 575
P++QAQPGL+GPVRG+GGPAPGMMQPQISRPPQ+ PP P P
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPQIIRPPGQMPPQPP 166
>gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 282 bits (722), Expect = 2e-75
Identities = 133/166 (80%), Positives = 149/166 (89%)
Frame = +3
Query: 78 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPS 257
MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG K +
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 258 DADREDRRTLGLVLLRGEEVVSMTVEGPPPPEESRSKAVNAAALAGPGIGRAAGRGIPAA 437
+RE+RRTLGLVLLRGEEV+SMTVEGPPPPEESR+K+ + A+AGPGIGRAAGRG+P
Sbjct: 61 SEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120
Query: 438 PVIQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLSAPPVSYPSNAP 575
P++QAQPGL+GPVRG+GGPAPGMMQPQISRPPQ+ PP P P
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPQIIRPPGQMPPQPP 166
>dbj|BAC07386.1| putative snRNP protein [Oryza sativa (japonica cultivar-group)]
gi|22202782|dbj|BAC07438.1| putative snRNP protein
[Oryza sativa (japonica cultivar-group)]
Length = 314
Score = 272 bits (696), Expect = 2e-72
Identities = 136/170 (80%), Positives = 151/170 (88%), Gaps = 3/170 (1%)
Frame = +3
Query: 63 PETATMSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAK 242
P A MS K SKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP+K
Sbjct: 49 PPPAAMSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 108
Query: 243 GKKPSDADREDRRTLGLVLLRGEEVVSMTVEGPPPPEESRSKAVNA-AALAGPGIGRAAG 419
K + +RE+RRTLGL+LLRGEEVVSMTVEGPPPP+ESR+KA A AA+AGPG+GRAAG
Sbjct: 109 SSK-TTGEREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAGAGAAMAGPGVGRAAG 167
Query: 420 RGIPAAPVIQAQPGLAGPVRGVGGPAPGMMQPQISRP--PQLSAPPVSYP 563
RG+PA ++QAQPGLAGPVRGVGGPAPGMMQPQISRP P LSAPPV+YP
Sbjct: 168 RGVPAGQMLQAQPGLAGPVRGVGGPAPGMMQPQISRPPMPNLSAPPVAYP 217
>pir||A35448 small nuclear ribonucleoprotein-associated protein N - rat
gi|206694|gb|AAA42059.1| snRNP-associated polypeptide N
Length = 240
Score = 184 bits (468), Expect = 5e-46
Identities = 93/172 (54%), Positives = 121/172 (70%), Gaps = 10/172 (5%)
Frame = +3
Query: 78 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPS 257
M++ KSSKMLQ+I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P K+P
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRFFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQP- 59
Query: 258 DADREDRRTLGLVLLRGEEVVSMTVEGPPPPEESRSKAVNAAALAGPGIGRAAGRGIPA- 434
+RE++R LGLVLLRGE +VSMTVEGPPP + ++ A+A GPG+GRAAGRG+PA
Sbjct: 60 --EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLASAAGGPGVGRAAGRGVPAG 117
Query: 435 APVIQAQPGLAGPVRGVGGPAPGMMQPQ---------ISRPPQLSAPPVSYP 563
P+ QA GLAGPVRGVGGP+ +M PQ ++ ++ P YP
Sbjct: 118 VPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYP 169
Score = 32.0 bits (71), Expect = 5.8
Identities = 21/65 (32%), Positives = 28/65 (42%), Gaps = 5/65 (7%)
Frame = +3
Query: 336 GPPPPEESRSKAVNAAALAGPGIGRAAGR--GIPAA---PVIQAQPGLAGPVRGVGGPAP 500
G PPP R+ PG+ G G+P A P+ PG+ P G+ GP P
Sbjct: 173 GTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPAQGRPIGMPPPGMRLPPPGIRGPPP 232
Query: 501 GMMQP 515
M+P
Sbjct: 233 PGMRP 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,606,233
Number of Sequences: 1393205
Number of extensions: 15085555
Number of successful extensions: 133525
Number of sequences better than 10.0: 1956
Number of HSP's better than 10.0 without gapping: 81297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121530
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
