Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005755A_C01 KMC005755A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00914 leucine-rich repeat protein F21B7.28 - Arabidopsis t... 211 7e-54
ref|NP_563685.1| leucine rich repeat protein family; protein id:... 211 7e-54
ref|NP_192210.1| leucine rich repeat protein family; protein id:... 207 8e-53
ref|NP_188391.1| leucine rich repeat protein family; protein id:... 114 7e-25
gb|AAL08699.1|AF307068_1 fil2-1 [Antirrhinum majus subsp. cirrhi... 55 9e-07
>pir||T00914 leucine-rich repeat protein F21B7.28 - Arabidopsis thaliana
Length = 397
Score = 211 bits (536), Expect = 7e-54
Identities = 100/145 (68%), Positives = 123/145 (83%)
Frame = -3
Query: 596 SLNWFTGPILAQLFSFPLTSLHLERNQFTGSVQPLNEVTIQTVDLSYNQFSGEISPMLAS 417
SLN FTG I A++F+FP+T+L L+RN F G +QP N+VTI TVDLSYN+FSG ISP+L+S
Sbjct: 248 SLNRFTGTIPARVFAFPITNLQLQRNFFFGLIQPANQVTISTVDLSYNRFSGGISPLLSS 307
Query: 416 VQHLYLNNNKFIGQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLCLQYN 237
V++LYLN+N+F G+VP SFVERL++A+IQ LYLQHN+LTGI ISP AEIP+SS+LCLQYN
Sbjct: 308 VENLYLNSNRFTGEVPASFVERLLSANIQTLYLQHNFLTGIQISPAAEIPVSSSLCLQYN 367
Query: 236 CMVPPPQMTCPVKAGNQKIRPAQQC 162
CMVPP Q CP+KAG QK RP QC
Sbjct: 368 CMVPPLQTPCPLKAGPQKTRPTTQC 392
Score = 51.2 bits (121), Expect = 1e-05
Identities = 43/143 (30%), Positives = 63/143 (43%), Gaps = 23/143 (16%)
Frame = -3
Query: 596 SLNWFTGPILAQLFSFP-LTSLHLERNQFTGSVQPLNEVTIQTVDLSYNQFSGEISP--- 429
S N TG I + S P L++L L N TGS+ P T+ +DL N +G ISP
Sbjct: 155 SYNQLTGTISPSIGSLPELSNLILCHNHLTGSIPPFLSQTLTRIDLKRNSLTGSISPASL 214
Query: 428 -------------MLASVQHLYLNNNKF------IGQVPGSFVERLMTASIQILYLQHNY 306
+ SV H+ L N+ + + G+ R+ I L LQ N+
Sbjct: 215 PPSLQYLSLAWNQLTGSVYHVLLRLNQLNYLDLSLNRFTGTIPARVFAFPITNLQLQRNF 274
Query: 305 LTGIAISPTAEIPMSSTLCLQYN 237
G+ I P ++ + ST+ L YN
Sbjct: 275 FFGL-IQPANQVTI-STVDLSYN 295
Score = 47.8 bits (112), Expect = 1e-04
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Frame = -3
Query: 545 LTSLHLERNQFTGSVQP-LNEVT-IQTVDLSYNQFSGEISPMLAS---VQHLYLNNNKFI 381
L L + RN +G + L EV ++T+DLSYNQ +G ISP + S + +L L +N
Sbjct: 125 LRFLAISRNFISGEIPASLGEVRGLRTLDLSYNQLTGTISPSIGSLPELSNLILCHNHLT 184
Query: 380 GQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLCLQYN 237
G +P F+ + +T + L+ N LTG +ISP + P L L +N
Sbjct: 185 GSIP-PFLSQTLTR----IDLKRNSLTG-SISPASLPPSLQYLSLAWN 226
>ref|NP_563685.1| leucine rich repeat protein family; protein id: At1g03440.1,
supported by cDNA: gi_12083225 [Arabidopsis thaliana]
gi|25406734|pir||A86166 protein F21B7.6 [imported] -
Arabidopsis thaliana gi|9280642|gb|AAF86511.1|AC002560_4
F21B7.6 [Arabidopsis thaliana]
gi|12083226|gb|AAG48772.1|AF332409_1 unknown protein
[Arabidopsis thaliana]
Length = 395
Score = 211 bits (536), Expect = 7e-54
Identities = 100/145 (68%), Positives = 123/145 (83%)
Frame = -3
Query: 596 SLNWFTGPILAQLFSFPLTSLHLERNQFTGSVQPLNEVTIQTVDLSYNQFSGEISPMLAS 417
SLN FTG I A++F+FP+T+L L+RN F G +QP N+VTI TVDLSYN+FSG ISP+L+S
Sbjct: 246 SLNRFTGTIPARVFAFPITNLQLQRNFFFGLIQPANQVTISTVDLSYNRFSGGISPLLSS 305
Query: 416 VQHLYLNNNKFIGQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLCLQYN 237
V++LYLN+N+F G+VP SFVERL++A+IQ LYLQHN+LTGI ISP AEIP+SS+LCLQYN
Sbjct: 306 VENLYLNSNRFTGEVPASFVERLLSANIQTLYLQHNFLTGIQISPAAEIPVSSSLCLQYN 365
Query: 236 CMVPPPQMTCPVKAGNQKIRPAQQC 162
CMVPP Q CP+KAG QK RP QC
Sbjct: 366 CMVPPLQTPCPLKAGPQKTRPTTQC 390
Score = 51.2 bits (121), Expect = 1e-05
Identities = 43/143 (30%), Positives = 63/143 (43%), Gaps = 23/143 (16%)
Frame = -3
Query: 596 SLNWFTGPILAQLFSFP-LTSLHLERNQFTGSVQPLNEVTIQTVDLSYNQFSGEISP--- 429
S N TG I + S P L++L L N TGS+ P T+ +DL N +G ISP
Sbjct: 153 SYNQLTGTISPSIGSLPELSNLILCHNHLTGSIPPFLSQTLTRIDLKRNSLTGSISPASL 212
Query: 428 -------------MLASVQHLYLNNNKF------IGQVPGSFVERLMTASIQILYLQHNY 306
+ SV H+ L N+ + + G+ R+ I L LQ N+
Sbjct: 213 PPSLQYLSLAWNQLTGSVYHVLLRLNQLNYLDLSLNRFTGTIPARVFAFPITNLQLQRNF 272
Query: 305 LTGIAISPTAEIPMSSTLCLQYN 237
G+ I P ++ + ST+ L YN
Sbjct: 273 FFGL-IQPANQVTI-STVDLSYN 293
Score = 47.8 bits (112), Expect = 1e-04
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Frame = -3
Query: 545 LTSLHLERNQFTGSVQP-LNEVT-IQTVDLSYNQFSGEISPMLAS---VQHLYLNNNKFI 381
L L + RN +G + L EV ++T+DLSYNQ +G ISP + S + +L L +N
Sbjct: 123 LRFLAISRNFISGEIPASLGEVRGLRTLDLSYNQLTGTISPSIGSLPELSNLILCHNHLT 182
Query: 380 GQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLCLQYN 237
G +P F+ + +T + L+ N LTG +ISP + P L L +N
Sbjct: 183 GSIP-PFLSQTLTR----IDLKRNSLTG-SISPASLPPSLQYLSLAWN 224
>ref|NP_192210.1| leucine rich repeat protein family; protein id: At4g03010.1
[Arabidopsis thaliana] gi|7487941|pir||T01392
leucine-rich repeat protein T4I9.11 - Arabidopsis
thaliana gi|3924604|gb|AAC79105.1| putative leucine-rich
repeat protein [Arabidopsis thaliana]
gi|7269786|emb|CAB77786.1| putative leucine-rich repeat
protein [Arabidopsis thaliana]
Length = 395
Score = 207 bits (527), Expect = 8e-53
Identities = 99/145 (68%), Positives = 121/145 (83%)
Frame = -3
Query: 596 SLNWFTGPILAQLFSFPLTSLHLERNQFTGSVQPLNEVTIQTVDLSYNQFSGEISPMLAS 417
SLN FTG I Q+F+FP+T+L L+RN F G +QP N+VTI TVDLSYN+FSGE+SP+L++
Sbjct: 246 SLNRFTGAIPGQIFTFPITNLQLQRNFFYGVIQPPNQVTIPTVDLSYNRFSGELSPLLSN 305
Query: 416 VQHLYLNNNKFIGQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLCLQYN 237
VQ+LYLNNN+F GQVP SFV+RL+ ++IQ LYLQHN+LTGI ISP A+IP+SS+LCLQYN
Sbjct: 306 VQNLYLNNNRFTGQVPVSFVDRLLASNIQTLYLQHNFLTGIQISPAADIPVSSSLCLQYN 365
Query: 236 CMVPPPQMTCPVKAGNQKIRPAQQC 162
CMV P Q CPVKAG QK RP QC
Sbjct: 366 CMVLPVQTPCPVKAGLQKTRPTTQC 390
Score = 47.0 bits (110), Expect = 2e-04
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Frame = -3
Query: 545 LTSLHLERNQFTGSVQP-LNEVT-IQTVDLSYNQFSGEISPMLAS---VQHLYLNNNKFI 381
L L + RN +G + L+E+ ++T+DLSYNQ +G I P + S + +L L +N
Sbjct: 123 LRFLAISRNFISGEIPASLSELRGLKTLDLSYNQLTGSIPPSIGSLPELSNLILCHNHLN 182
Query: 380 GQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLCLQYNCMVPP 222
G +P + ++ S+ + L+ N LTGI IS T+ P L L +N + P
Sbjct: 183 GSIP-----QFLSQSLTRIDLKRNNLTGI-ISLTSLPPSLQYLSLAWNQLTGP 229
>ref|NP_188391.1| leucine rich repeat protein family; protein id: At3g17640.1
[Arabidopsis thaliana] gi|9294152|dbj|BAB02054.1|
leucine-rich repeat disease resistance protein-like
[Arabidopsis thaliana]
Length = 396
Score = 114 bits (286), Expect = 7e-25
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 10/158 (6%)
Frame = -3
Query: 596 SLNWFTGPILAQLFSFPLTSLHLERNQFTGSVQPLNEVTI----QTVDLSYNQFSGEISP 429
S+N FTG I + LFS ++++ L+RN FT S+ N ++ VDLS+N SGE++P
Sbjct: 236 SMNQFTGAIPSSLFSPTISTMFLQRNNFT-SIATSNATSLLPEGSIVDLSHNSISGELTP 294
Query: 428 MLASVQHLYLNNNKFIGQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLC 249
L + L+LNNN+ G +P +V+ L+ + + L+LQHNY T + ++P S +LC
Sbjct: 295 ALVGAEALFLNNNRLTGDIPEEYVKSLINGTTKQLFLQHNYFTRFPWNSGLQLPDSVSLC 354
Query: 248 LQYNCMVPPPQM---TCPVKAGNQKIRPAQQC---HNH 153
L YNCM P + TCP++ RPA QC +NH
Sbjct: 355 LSYNCMETDPVVGLSTCPIEVAPLLSRPASQCSRFYNH 392
Score = 44.7 bits (104), Expect = 0.001
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Frame = -3
Query: 590 NWFTGPILAQLFSFP-LTSLHLERNQFTGSVQPLNEVT--IQTVDLSYNQFSGEISPMLA 420
N TGPI S L +L L NQ +GS+ P ++ + L+ N FS + P+ +
Sbjct: 124 NRLTGPIPVSFSSLSNLHTLDLSYNQLSGSLPPFLTTLPRLKVLVLASNHFSNNLKPVSS 183
Query: 419 SVQHLYLNNNKFIGQVPGSFVERLMTASI----------------QILY--LQHNYLTGI 294
+ HL L N+ GQ+P +F L S+ +++Y L N TG
Sbjct: 184 PLFHLDLKMNQISGQLPPAFPTTLRYLSLSGNSMQGTINAMEPLTELIYIDLSMNQFTG- 242
Query: 293 AISPTAEIPMSSTLCLQYN 237
AI + P ST+ LQ N
Sbjct: 243 AIPSSLFSPTISTMFLQRN 261
>gb|AAL08699.1|AF307068_1 fil2-1 [Antirrhinum majus subsp. cirrhigerum]
gi|15810909|gb|AAL08700.1|AF307069_1 fil2-1 [Antirrhinum
majus subsp. cirrhigerum]
Length = 181
Score = 54.7 bits (130), Expect = 9e-07
Identities = 36/89 (40%), Positives = 51/89 (56%), Gaps = 5/89 (5%)
Frame = -3
Query: 545 LTSLHLERNQFTGSVQP-LNEV-TIQTVDLSYNQFSGEISPMLASVQHL---YLNNNKFI 381
L SL + +G V L+E+ + +DLS+N FSG I P L +++L L+ NK
Sbjct: 42 LRSLTISWTNISGPVPSFLSELKNLTNLDLSFNNFSGSIPPSLVQLRNLNGMRLDRNKLT 101
Query: 380 GQVPGSFVERLMTASIQILYLQHNYLTGI 294
G +P SF +T S+Q LYL HN L+GI
Sbjct: 102 GNIPESFGN--LTPSLQYLYLSHNQLSGI 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,700,461
Number of Sequences: 1393205
Number of extensions: 11152504
Number of successful extensions: 30842
Number of sequences better than 10.0: 854
Number of HSP's better than 10.0 without gapping: 27554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30043
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
