Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005746A_C01 KMC005746A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding... 174 8e-43
ref|NP_173349.1| light-harvesting chlorophyll a/b binding protei... 174 8e-43
pir||S46295 chlorophyll a/b-binding protein type II - Arabidopsi... 172 2e-42
pir||H86324 hypothetical protein T29M8.2 - Arabidopsis thaliana ... 167 1e-40
pir||S17695 chlorophyll a/b-binding protein (clone pINEab 31) - ... 137 1e-31
>gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 174 bits (441), Expect = 8e-43
Identities = 80/91 (87%), Positives = 84/91 (91%)
Frame = -1
Query: 604 DIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF 425
DIEPK P++ NPKPDVGYPGGLWFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GF F
Sbjct: 179 DIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF 238
Query: 424 QAIYTGQGPIENLMAHLADPGHCNIFSAFTS 332
QA YT Q PIENLMAHLADPGHCN+FSAFTS
Sbjct: 239 QATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>ref|NP_173349.1| light-harvesting chlorophyll a/b binding protein; protein id:
At1g19150.1, supported by cDNA: 252299., supported by
cDNA: gi_541564 [Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll
a/b-binding protein, putative [Arabidopsis thaliana]
Length = 270
Score = 174 bits (441), Expect = 8e-43
Identities = 80/91 (87%), Positives = 84/91 (91%)
Frame = -1
Query: 604 DIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF 425
DIEPK P++ NPKPDVGYPGGLWFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GF F
Sbjct: 179 DIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF 238
Query: 424 QAIYTGQGPIENLMAHLADPGHCNIFSAFTS 332
QA YT Q PIENLMAHLADPGHCN+FSAFTS
Sbjct: 239 QATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>pir||S46295 chlorophyll a/b-binding protein type II - Arabidopsis thaliana
gi|541565|gb|AAA57542.1| PSI type II chlorophyll
a/b-binding protein
Length = 271
Score = 172 bits (437), Expect = 2e-42
Identities = 79/91 (86%), Positives = 83/91 (90%)
Frame = -1
Query: 604 DIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF 425
DIEPK P++ NPKPD GYPGGLWFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GF F
Sbjct: 180 DIEPKYPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF 239
Query: 424 QAIYTGQGPIENLMAHLADPGHCNIFSAFTS 332
QA YT Q PIENLMAHLADPGHCN+FSAFTS
Sbjct: 240 QATYTSQDPIENLMAHLADPGHCNVFSAFTS 270
>pir||H86324 hypothetical protein T29M8.2 - Arabidopsis thaliana
gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity
to a chlorophyll a/b-binding protein type II from
Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
Length = 267
Score = 167 bits (422), Expect = 1e-40
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = -1
Query: 604 DIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF 425
DIEPK P++ NPKPDVGYPGGLWFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GF F
Sbjct: 179 DIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF 238
Query: 424 QAIYTGQGPIENLMAHLADPGHCNIFS 344
QA YT Q PIENLMAHLADPGHCN+FS
Sbjct: 239 QATYTSQDPIENLMAHLADPGHCNVFS 265
>pir||S17695 chlorophyll a/b-binding protein (clone pINEab 31) - Scotch pine
gi|20792|emb|CAA41406.1| Type II chlorophyll a
/b-binding protein [Pinus sylvestris]
Length = 278
Score = 137 bits (344), Expect = 1e-31
Identities = 62/90 (68%), Positives = 71/90 (78%)
Frame = -1
Query: 598 EPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQA 419
+P PN DVGYPGGLWFDP+ WG GSPE + LRTKEIKNGRLAMLA +G WFQA
Sbjct: 189 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 248
Query: 418 IYTGQGPIENLMAHLADPGHCNIFSAFTSR 329
YTG GPI+NL+AHLADPGH IF+AF+S+
Sbjct: 249 EYTGTGPIDNLLAHLADPGHATIFAAFSSK 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,657,672
Number of Sequences: 1393205
Number of extensions: 13324534
Number of successful extensions: 29938
Number of sequences better than 10.0: 352
Number of HSP's better than 10.0 without gapping: 28352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29867
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
