Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005717A_C01 KMC005717A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD48198.1| RNA-binding protein [Medicago truncatula] 197 1e-49
dbj|BAC42194.1| unknown protein [Arabidopsis thaliana] 163 2e-39
dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultiva... 137 7e-32
ref|NP_177820.1| hypothetical protein; protein id: At1g76940.1 [... 111 8e-24
pir||C86346 F16F4.3 protein - Arabidopsis thaliana gi|8920632|gb... 106 2e-22
>emb|CAD48198.1| RNA-binding protein [Medicago truncatula]
Length = 261
Score = 197 bits (500), Expect = 1e-49
Identities = 94/109 (86%), Positives = 102/109 (93%)
Frame = -2
Query: 582 GPETVPLPPDA*STLYVEGLPSDCTKREVAHIFRPFVGYKEVRLVTKESKHRGGDPLILC 403
GPE LPPDA TLY+EGLPSDCT+REVAHIFRPFVGY+EVRLV+KE+KHRG DPLILC
Sbjct: 139 GPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRG-DPLILC 197
Query: 402 FVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRFPGPRSGAGPR 256
FVDFANPACAATALSALQGYKVDE++PESSHLRLQFSR+PGPRSG GPR
Sbjct: 198 FVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYPGPRSGGGPR 246
>dbj|BAC42194.1| unknown protein [Arabidopsis thaliana]
Length = 156
Score = 163 bits (412), Expect = 2e-39
Identities = 79/106 (74%), Positives = 91/106 (85%)
Frame = -2
Query: 564 LPPDA*STLYVEGLPSDCTKREVAHIFRPFVGYKEVRLVTKESKHRGGDPLILCFVDFAN 385
LP DA +TLYVEGLPS+C++REVAHIFRPFVGY+EVRLVTK+SKHR GDP++LCFVDF N
Sbjct: 53 LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTN 112
Query: 384 PACAATALSALQGYKVDELSPESSHLRLQFSRFPGPRSGAGPRGKR 247
PACAATALSALQGY++DE +S LRLQFSR PG R G RG+R
Sbjct: 113 PACAATALSALQGYRMDENESDSKFLRLQFSRKPGSR--PGQRGRR 156
>dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultivar-group)]
Length = 293
Score = 137 bits (346), Expect = 7e-32
Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 28/135 (20%)
Frame = -2
Query: 567 PLPPDA*STLYVEGLPSDCTKREVAHI----------------------------FRPFV 472
PLPPDA +TL++EG+P+DC +REV+ I FRPFV
Sbjct: 156 PLPPDASNTLFIEGIPTDCARREVSRILKSHAFFCLSLIFHLHKFCWSFTFPQDIFRPFV 215
Query: 471 GYKEVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFS 292
G++EVRLV+KE++H GGDP++LCFVDF + AA A+ ALQGYK DE S HLRLQF+
Sbjct: 216 GFREVRLVSKEARHPGGDPILLCFVDFETASQAAIAMDALQGYKFDEHDRNSPHLRLQFA 275
Query: 291 RFPGPRSGAGPRGKR 247
RF GPR G+GP G R
Sbjct: 276 RFTGPRGGSGPGGGR 290
>ref|NP_177820.1| hypothetical protein; protein id: At1g76940.1 [Arabidopsis
thaliana]
Length = 269
Score = 111 bits (277), Expect = 8e-24
Identities = 55/82 (67%), Positives = 65/82 (79%)
Frame = -2
Query: 564 LPPDA*STLYVEGLPSDCTKREVAHIFRPFVGYKEVRLVTKESKHRGGDPLILCFVDFAN 385
LP DA +TLYVEGLPS+C++REVA Y+EVRLVTK+SKHR GDP++LCFVDF N
Sbjct: 160 LPSDASNTLYVEGLPSNCSRREVAR-------YREVRLVTKDSKHRNGDPIVLCFVDFTN 212
Query: 384 PACAATALSALQGYKVDELSPE 319
PACAATALSALQG +V + E
Sbjct: 213 PACAATALSALQGNQVQDQDKE 234
>pir||C86346 F16F4.3 protein - Arabidopsis thaliana
gi|8920632|gb|AAF81354.1|AC036104_3 Contains weak
similarity to bab503 major core protein from Simian
T-cell lymphotrophic virus type 1 gb|AF230486.
[Arabidopsis thaliana]
Length = 430
Score = 106 bits (264), Expect = 2e-22
Identities = 57/105 (54%), Positives = 65/105 (61%)
Frame = -2
Query: 582 GPETVPLPPDA*STLYVEGLPSDCTKREVAHIFRPFVGYKEVRLVTKESKHRGGDPLILC 403
G E PLPPD +TLYVEGLPS+C++RE R GDP +LC
Sbjct: 311 GREPHPLPPDVSNTLYVEGLPSNCSRRE-----------------------RSGDPTVLC 347
Query: 402 FVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRFPGPRSG 268
FVDF N ACAATALSALQ Y++DE P+S LRLQF R PGPR G
Sbjct: 348 FVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPG 392
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,071,699
Number of Sequences: 1393205
Number of extensions: 10212747
Number of successful extensions: 26589
Number of sequences better than 10.0: 227
Number of HSP's better than 10.0 without gapping: 24827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26494
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
