Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005715A_C01 KMC005715A_c01
(413 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_645184.1| GMP synthase [Staphylococcus aureus subsp. aure... 35 0.22
ref|NP_765902.1| GMP synthase [Staphylococcus epidermidis ATCC 1... 35 0.22
ref|NP_370915.1| GMP synthase [Staphylococcus aureus subsp. aure... 35 0.22
ref|NP_148620.1| GMP synthase [Aeropyrum pernix] gi|13627227|sp|... 35 0.22
ref|ZP_00046975.1| hypothetical protein [Lactobacillus gasseri] 35 0.22
>ref|NP_645184.1| GMP synthase [Staphylococcus aureus subsp. aureus MW2]
gi|24211742|sp|Q8NY69|GUAA_STAAW GMP synthase
[glutamine-hydrolyzing] (Glutamine amidotransferase)
(GMP synthetase) gi|21203532|dbj|BAB94232.1| GMP
synthase [Staphylococcus aureus subsp. aureus MW2]
Length = 513
Score = 35.0 bits (79), Expect = 0.22
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 411 VVQDITSKPPSTIEWE 364
VV DITSKPPSTIEWE
Sbjct: 498 VVYDITSKPPSTIEWE 513
>ref|NP_765902.1| GMP synthase [Staphylococcus epidermidis ATCC 12228]
gi|27316815|gb|AAO05990.1|AE016752_23 GMP synthase
[Staphylococcus epidermidis ATCC 12228]
Length = 513
Score = 35.0 bits (79), Expect = 0.22
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 411 VVQDITSKPPSTIEWE 364
VV DITSKPPSTIEWE
Sbjct: 498 VVYDITSKPPSTIEWE 513
>ref|NP_370915.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926092|ref|NP_373625.1| GMP synthase
[Staphylococcus aureus subsp. aureus N315]
gi|24211763|sp|Q99WI8|GUAA_STAAM GMP synthase
[glutamine-hydrolyzing] (Glutamine amidotransferase)
(GMP synthetase) gi|25293820|pir||H89805 GMP synthase
[imported] - Staphylococcus aureus (strain N315)
gi|13700305|dbj|BAB41603.1| GMP synthase [Staphylococcus
aureus subsp. aureus N315] gi|14246159|dbj|BAB56553.1|
GMP synthase [Staphylococcus aureus subsp. aureus Mu50]
Length = 513
Score = 35.0 bits (79), Expect = 0.22
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 411 VVQDITSKPPSTIEWE 364
VV DITSKPPSTIEWE
Sbjct: 498 VVYDITSKPPSTIEWE 513
>ref|NP_148620.1| GMP synthase [Aeropyrum pernix] gi|13627227|sp|Q9Y933|GUAA_AERPE
GMP synthase [glutamine-hydrolyzing] (Glutamine
amidotransferase) (GMP synthetase)
gi|7438060|pir||C72476 probable GMP synthase APE2452 -
Aeropyrum pernix (strain K1) gi|5106156|dbj|BAA81467.1|
512aa long hypothetical GMP synthase [Aeropyrum pernix]
Length = 512
Score = 35.0 bits (79), Expect = 0.22
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 411 VVQDITSKPPSTIEWE 364
VV DITSKPPSTIEWE
Sbjct: 497 VVYDITSKPPSTIEWE 512
>ref|ZP_00046975.1| hypothetical protein [Lactobacillus gasseri]
Length = 517
Score = 35.0 bits (79), Expect = 0.22
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 411 VVQDITSKPPSTIEWE 364
VV DITSKPPSTIEWE
Sbjct: 502 VVYDITSKPPSTIEWE 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 346,321,060
Number of Sequences: 1393205
Number of extensions: 6991008
Number of successful extensions: 15343
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 15039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15337
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
