Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005713A_C01 KMC005713A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF63205.1|AF245119_1 AP2-related transcription factor [Mesem... 124 8e-28
sp|O80337|ERFI_ARATH Ethylene responsive element binding factor ... 111 7e-24
pir||T51988 ethylene responsive element binding factor 1 [import... 111 7e-24
pir||A85196 EREBP-2 protein [imported] - Arabidopsis thaliana gi... 92 4e-18
dbj|BAA97122.1| ethylene-responsive element binding factor [Nico... 90 2e-17
>gb|AAF63205.1|AF245119_1 AP2-related transcription factor [Mesembryanthemum crystallinum]
Length = 282
Score = 124 bits (311), Expect = 8e-28
Identities = 71/131 (54%), Positives = 84/131 (63%), Gaps = 4/131 (3%)
Frame = +3
Query: 192 STYDSDLAILESIRRHLLGESDICIFGAPISNSGNPPVYVRSSSFSKLYPCLTDNWGELP 371
+ ++SD A+LESIRRHLL + D GAP +G+ PVY R+SSFS LYPCLTDNWGELP
Sbjct: 5 ANFESDFAVLESIRRHLLEDWDPRA-GAPAITTGSGPVYHRNSSFSSLYPCLTDNWGELP 63
Query: 372 LKEDDSEDMMLYGVLRDAVNEGWVPSLDSSGF----LPVKSEPELFPAVQSPPERVVPAP 539
LKEDDSEDM+L+GVLRDAV+ GW P S PV +PE V SP P
Sbjct: 64 LKEDDSEDMVLFGVLRDAVHTGWSPQSGSESGSGSPAPVTVKPE---PVDSPVSSPAPVR 120
Query: 540 VIPKEEVMPAA 572
V E + AA
Sbjct: 121 VAGGEAPVAAA 131
>sp|O80337|ERFI_ARATH Ethylene responsive element binding factor 1 (AtERF1) (EREBP-2
protein) gi|16648795|gb|AAL25588.1| AT4g17500/dl4785w
[Arabidopsis thaliana] gi|17064914|gb|AAL32611.1|
Unknown protein [Arabidopsis thaliana]
gi|27311945|gb|AAO00938.1| Unknown protein [Arabidopsis
thaliana]
Length = 268
Score = 111 bits (277), Expect = 7e-24
Identities = 68/142 (47%), Positives = 82/142 (56%), Gaps = 19/142 (13%)
Frame = +3
Query: 204 SDLAILESIRRHLLGESD-------------ICIFGAPISNSGNPPVYVRSSSFSKLYPC 344
SD A LESIRRHLLGES+ C+ G I PVY R+ SFSKLYPC
Sbjct: 9 SDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIK-----PVYGRNPSFSKLYPC 63
Query: 345 LTDNWGELPLKEDDSEDMMLYGVLRDAVNEGWVPSL-----DSSGFLPVKSE-PELFPAV 506
T++WG+LPLKE+DSEDM++YG+L DA + GW PS D S F VK E PE F AV
Sbjct: 64 FTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAV 123
Query: 507 QSPPERVVPAPVIPKEEVMPAA 572
S P + KE+ P +
Sbjct: 124 DSVP--------VKKEKTSPVS 137
>pir||T51988 ethylene responsive element binding factor 1 [imported] -
Arabidopsis thaliana gi|3434967|dbj|BAA32418.1| ethylene
responsive element binding factor 1 [Arabidopsis
thaliana]
Length = 266
Score = 111 bits (277), Expect = 7e-24
Identities = 68/142 (47%), Positives = 82/142 (56%), Gaps = 19/142 (13%)
Frame = +3
Query: 204 SDLAILESIRRHLLGESD-------------ICIFGAPISNSGNPPVYVRSSSFSKLYPC 344
SD A LESIRRHLLGES+ C+ G I PVY R+ SFSKLYPC
Sbjct: 7 SDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIK-----PVYGRNPSFSKLYPC 61
Query: 345 LTDNWGELPLKEDDSEDMMLYGVLRDAVNEGWVPSL-----DSSGFLPVKSE-PELFPAV 506
T++WG+LPLKE+DSEDM++YG+L DA + GW PS D S F VK E PE F AV
Sbjct: 62 FTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAV 121
Query: 507 QSPPERVVPAPVIPKEEVMPAA 572
S P + KE+ P +
Sbjct: 122 DSVP--------VKKEKTSPVS 135
>pir||A85196 EREBP-2 protein [imported] - Arabidopsis thaliana
gi|5281024|emb|CAB45963.1| EREBP-2 protein [Arabidopsis
thaliana] gi|7268502|emb|CAB78753.1| EREBP-2 protein
[Arabidopsis thaliana]
Length = 225
Score = 92.4 bits (228), Expect = 4e-18
Identities = 50/97 (51%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Frame = +3
Query: 300 PVYVRSSSFSKLYPCLTDNWGELPLKEDDSEDMMLYGVLRDAVNEGWVPSL-----DSSG 464
PVY R+ SFSKLYPC T++WG+LPLKE+DSEDM++YG+L DA + GW PS D S
Sbjct: 6 PVYGRNPSFSKLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSS 65
Query: 465 FLPVKSE-PELFPAVQSPPERVVPAPVIPKEEVMPAA 572
F VK E PE F AV S P + KE+ P +
Sbjct: 66 FPSVKIETPESFAAVDSVP--------VKKEKTSPVS 94
>dbj|BAA97122.1| ethylene-responsive element binding factor [Nicotiana sylvestris]
Length = 237
Score = 89.7 bits (221), Expect = 2e-17
Identities = 43/89 (48%), Positives = 55/89 (61%)
Frame = +3
Query: 300 PVYVRSSSFSKLYPCLTDNWGELPLKEDDSEDMMLYGVLRDAVNEGWVPSLDSSGFLPVK 479
PVY R+SSFS L PCLTD WG+LPLK DDSEDM++YG+L DA+ GW P +S + +
Sbjct: 10 PVYHRTSSFSSLMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAE 69
Query: 480 SEPELFPAVQSPPERVVPAPVIPKEEVMP 566
E+ PA P PA + V+P
Sbjct: 70 PREEIEPATSPVPSVAPPAETTTAQAVVP 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,989,728
Number of Sequences: 1393205
Number of extensions: 12719694
Number of successful extensions: 51556
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 42305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50740
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
