Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005707A_C01 KMC005707A_c01
(799 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA07236.1| beta-galactosidase [Cicer arietinum] 151 9e-36
emb|CAC44500.1| beta-galactosidase [Fragaria x ananassa] 140 3e-32
ref|NP_187988.1| glycosyl hydrolase family 35 (beta-galactosidas... 135 5e-31
gb|AAM13196.1| galactosidase, putative [Arabidopsis thaliana] 135 5e-31
emb|CAA10173.1| ss-galactosidase [Lycopersicon esculentum] gi|79... 128 1e-28
>emb|CAA07236.1| beta-galactosidase [Cicer arietinum]
Length = 707
Score = 151 bits (382), Expect = 9e-36
Identities = 67/75 (89%), Positives = 72/75 (95%)
Frame = +1
Query: 1 PGQKISSIKFASFGTPVGSCGNYHEGSCHAHKSYDAFERSCVGQNQCAVTVAPEIFGGDP 180
PGQKISSIKFASFGTPVGSCGNY EGSCHAHKSYDAF+R+CVGQ+ C VTV+PEIFGGDP
Sbjct: 633 PGQKISSIKFASFGTPVGSCGNYREGSCHAHKSYDAFQRNCVGQSSCTVTVSPEIFGGDP 692
Query: 181 CPNVMKKLSVEAVCT 225
CPNVMKKLSVEA+CT
Sbjct: 693 CPNVMKKLSVEAICT 707
>emb|CAC44500.1| beta-galactosidase [Fragaria x ananassa]
Length = 843
Score = 140 bits (352), Expect = 3e-32
Identities = 61/75 (81%), Positives = 69/75 (91%)
Frame = +1
Query: 1 PGQKISSIKFASFGTPVGSCGNYHEGSCHAHKSYDAFERSCVGQNQCAVTVAPEIFGGDP 180
PGQKISSIKFASFGTP G CG++ EG CHAHKSY+AFERSC+GQN C+VTV+PE FGGDP
Sbjct: 769 PGQKISSIKFASFGTPEGVCGSFREGGCHAHKSYNAFERSCIGQNSCSVTVSPENFGGDP 828
Query: 181 CPNVMKKLSVEAVCT 225
CPNVMKKLSVEA+C+
Sbjct: 829 CPNVMKKLSVEAICS 843
>ref|NP_187988.1| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
At3g13750.1, supported by cDNA: gi_20260595 [Arabidopsis
thaliana] gi|6686874|emb|CAB64737.1| putative
beta-galactosidase [Arabidopsis thaliana]
gi|9294020|dbj|BAB01923.1| beta-galactosidase
[Arabidopsis thaliana]
Length = 847
Score = 135 bits (341), Expect = 5e-31
Identities = 58/74 (78%), Positives = 68/74 (91%)
Frame = +1
Query: 1 PGQKISSIKFASFGTPVGSCGNYHEGSCHAHKSYDAFERSCVGQNQCAVTVAPEIFGGDP 180
PGQKI+++KFASFGTP G+CG+Y +GSCHAH SYDAF + CVGQN C+VTVAPE+FGGDP
Sbjct: 773 PGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDP 832
Query: 181 CPNVMKKLSVEAVC 222
CPNVMKKL+VEAVC
Sbjct: 833 CPNVMKKLAVEAVC 846
>gb|AAM13196.1| galactosidase, putative [Arabidopsis thaliana]
Length = 847
Score = 135 bits (341), Expect = 5e-31
Identities = 58/74 (78%), Positives = 68/74 (91%)
Frame = +1
Query: 1 PGQKISSIKFASFGTPVGSCGNYHEGSCHAHKSYDAFERSCVGQNQCAVTVAPEIFGGDP 180
PGQKI+++KFASFGTP G+CG+Y +GSCHAH SYDAF + CVGQN C+VTVAPE+FGGDP
Sbjct: 773 PGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDP 832
Query: 181 CPNVMKKLSVEAVC 222
CPNVMKKL+VEAVC
Sbjct: 833 CPNVMKKLAVEAVC 846
>emb|CAA10173.1| ss-galactosidase [Lycopersicon esculentum]
gi|7939619|gb|AAF70822.1|AF154421_1 beta-galactosidase
[Lycopersicon esculentum]
Length = 838
Score = 128 bits (321), Expect = 1e-28
Identities = 56/74 (75%), Positives = 64/74 (85%)
Frame = +1
Query: 4 GQKISSIKFASFGTPVGSCGNYHEGSCHAHKSYDAFERSCVGQNQCAVTVAPEIFGGDPC 183
GQKI+SIKFASFGTP G CG++ EGSCHA SYDAFER C+GQN C+V V PEIFGGDPC
Sbjct: 765 GQKITSIKFASFGTPQGVCGSFREGSCHAFHSYDAFERYCIGQNSCSVPVTPEIFGGDPC 824
Query: 184 PNVMKKLSVEAVCT 225
P+VMKKLSVE +C+
Sbjct: 825 PHVMKKLSVEVICS 838
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 673,847,970
Number of Sequences: 1393205
Number of extensions: 14720882
Number of successful extensions: 34264
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 33043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34214
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40336047648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
