Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005701A_C01 KMC005701A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ... 188 4e-47
gb|AAM78591.1| rubisco activase [Chenopodium quinoa] 187 9e-47
sp|O49074|RCA_LYCPN Ribulose bisphosphate carboxylase/oxygenase ... 184 1e-45
sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ... 184 1e-45
gb|AAN15946.1| rubisco activase [Medicago sativa] 183 2e-45
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase) (RA) gi|541930|pir||S39551
ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
- apple tree gi|415852|emb|CAA79857.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Malus x domestica]
Length = 437
Score = 188 bits (478), Expect = 4e-47
Identities = 91/104 (87%), Positives = 100/104 (95%)
Frame = -2
Query: 614 GIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSK 435
GIF++DNV++E +V +VDTFPGQSIDFFGALRARVYDDEVRKWI+GVGVD IGKKLVNSK
Sbjct: 318 GIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSK 377
Query: 434 EGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLNEAA 303
EGPP FEQPKMT+EKLLEYGNMLVQEQENVKRVQLADKYL+EAA
Sbjct: 378 EGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
>gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 187 bits (475), Expect = 9e-47
Identities = 90/104 (86%), Positives = 99/104 (94%)
Frame = -2
Query: 614 GIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSK 435
GIF+TDNV E+ VV +VDTFPGQSIDFFGALRARVYDDEVRKW+S VG+D +GKKLVNS+
Sbjct: 319 GIFRTDNVPEDHVVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGIDAVGKKLVNSR 378
Query: 434 EGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLNEAA 303
+GPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL+EAA
Sbjct: 379 DGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 422
>sp|O49074|RCA_LYCPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase) (RA)
gi|2707330|gb|AAC15236.1| rubisco activase [Lycopersicon
pennellii]
Length = 459
Score = 184 bits (466), Expect = 1e-45
Identities = 88/104 (84%), Positives = 98/104 (93%)
Frame = -2
Query: 614 GIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSK 435
GIF+TDNV EEAVV IVD+FPGQSIDFFGALRARVYDDEVRKW+SG G++LIG+KL+NS+
Sbjct: 317 GIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSR 376
Query: 434 EGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLNEAA 303
+GPP FEQPKMTLEKLLEYGNMLVQEQENVKRVQLA+ YL EAA
Sbjct: 377 DGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAA 420
>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase) (RA)
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna
radiata]
Length = 439
Score = 184 bits (467), Expect(2) = 1e-45
Identities = 89/104 (85%), Positives = 96/104 (91%)
Frame = -2
Query: 614 GIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSK 435
GIF+TD V EE + +VDTFPGQSIDFFGALRARVYDDEVRKWISGVGVD GKKLVNSK
Sbjct: 320 GIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSK 379
Query: 434 EGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLNEAA 303
EGPP F+QPKM+L+KLL+YGNMLVQEQENVKRVQLADKYLNEAA
Sbjct: 380 EGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAA 423
Score = 20.8 bits (42), Expect(2) = 1e-45
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 301 LGNANERCYQEGNF 260
LGNANE + G+F
Sbjct: 424 LGNANEDAIKSGSF 437
>gb|AAN15946.1| rubisco activase [Medicago sativa]
Length = 270
Score = 183 bits (464), Expect = 2e-45
Identities = 88/104 (84%), Positives = 97/104 (92%)
Frame = -2
Query: 614 GIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSK 435
GIF+ DN++++ +V IVDTFPGQSIDFFGALRARVYDDEVRKW+SGVG++ IGKKLVNSK
Sbjct: 153 GIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGIETIGKKLVNSK 212
Query: 434 EGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLNEAA 303
EGPPVFEQPKMTLEKLLEYGNMLV EQENVKRVQLADKYL AA
Sbjct: 213 EGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLEGAA 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,901,422
Number of Sequences: 1393205
Number of extensions: 11801737
Number of successful extensions: 34938
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 33238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34795
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
