Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005693A_C01 KMC005693A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563659.1| glycosyl hydrolase family 3; protein id: At1g02... 171 5e-42
pir||D86156 hypothetical protein T14P4.8 - Arabidopsis thaliana ... 171 5e-42
gb|AAM00218.1|AF362990_1 beta-D-xylosidase [Prunus persica] 146 2e-34
ref|NP_199747.1| glycosyl hydrolase family 3; protein id: At5g49... 120 1e-26
ref|NP_201262.1| glycosyl hydrolase family 3; protein id: At5g64... 89 3e-17
>ref|NP_563659.1| glycosyl hydrolase family 3; protein id: At1g02640.1, supported by
cDNA: gi_14194120 [Arabidopsis thaliana]
gi|14194121|gb|AAK56255.1|AF367266_1 At1g02640/T14P4_11
[Arabidopsis thaliana] gi|23506063|gb|AAN28891.1|
At1g02640/T14P4_11 [Arabidopsis thaliana]
Length = 768
Score = 171 bits (434), Expect = 5e-42
Identities = 84/127 (66%), Positives = 102/127 (80%)
Frame = -2
Query: 567 RHANSTNISNKAIRVTHARCGKLSIALHVNVKNVGSRDGTHTLLVFSAPPDGGAHWAVQK 388
R N T +S K+IRVTHARC +LS+ +HV V NVGSRDGTHT+LVFSAPP G WA +K
Sbjct: 645 RGRNGT-VSGKSIRVTHARCDRLSLGVHVEVTNVGSRDGTHTMLVFSAPP--GGEWAPKK 701
Query: 387 QLVAFEKVHVPAKSQQRVQINIHVCKLLSVVDRSGIRRIPMGEHSLHIGDVKHSVSLQAD 208
QLVAFE+VHV ++RVQ+NIHVCK LSVVDR+G RRIP+G+H +HIGD H+VSLQA
Sbjct: 702 QLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQAS 761
Query: 207 AIGIIKS 187
+G+IKS
Sbjct: 762 TLGVIKS 768
>pir||D86156 hypothetical protein T14P4.8 - Arabidopsis thaliana
gi|9972374|gb|AAG10624.1|AC022521_2 Similar to xylosidase
[Arabidopsis thaliana]
Length = 763
Score = 171 bits (434), Expect = 5e-42
Identities = 84/127 (66%), Positives = 102/127 (80%)
Frame = -2
Query: 567 RHANSTNISNKAIRVTHARCGKLSIALHVNVKNVGSRDGTHTLLVFSAPPDGGAHWAVQK 388
R N T +S K+IRVTHARC +LS+ +HV V NVGSRDGTHT+LVFSAPP G WA +K
Sbjct: 640 RGRNGT-VSGKSIRVTHARCDRLSLGVHVEVTNVGSRDGTHTMLVFSAPP--GGEWAPKK 696
Query: 387 QLVAFEKVHVPAKSQQRVQINIHVCKLLSVVDRSGIRRIPMGEHSLHIGDVKHSVSLQAD 208
QLVAFE+VHV ++RVQ+NIHVCK LSVVDR+G RRIP+G+H +HIGD H+VSLQA
Sbjct: 697 QLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQAS 756
Query: 207 AIGIIKS 187
+G+IKS
Sbjct: 757 TLGVIKS 763
>gb|AAM00218.1|AF362990_1 beta-D-xylosidase [Prunus persica]
Length = 461
Score = 146 bits (369), Expect = 2e-34
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Frame = -2
Query: 597 TVVSVPVDGHRHANSTNISNKAIRVTHARCGKLS-IALHVNVKNVGSRDGTHTLLVFSAP 421
T+VSVP+ + ++ + +K +RV+H C LS + +HV+VKN GS DGTHTLLVF++P
Sbjct: 327 TLVSVPLTSLKATANSTMLSKTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSP 386
Query: 420 PDGGAHWAVQKQLVAFEKVHVPAKSQQRVQINIHVCKLLSVVDRSGIRRIPMGEHSLHIG 241
PDG WA KQL+ F K+H+ S++RV+I +HVCK LSVVDR GIRRIP+GEH L IG
Sbjct: 387 PDG--KWASSKQLMGFHKIHIATGSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIG 444
Query: 240 DVKHSVSLQADAIGIIK 190
D+ H VSLQ + +G IK
Sbjct: 445 DLSHHVSLQTN-LGEIK 460
>ref|NP_199747.1| glycosyl hydrolase family 3; protein id: At5g49360.1 [Arabidopsis
thaliana] gi|9759419|dbj|BAB09906.1| xylosidase
[Arabidopsis thaliana] gi|21539545|gb|AAM53325.1|
xylosidase [Arabidopsis thaliana]
Length = 774
Score = 120 bits (302), Expect = 1e-26
Identities = 64/129 (49%), Positives = 84/129 (64%), Gaps = 3/129 (2%)
Frame = -2
Query: 591 VSVPVDGHRHANST-NISNKAIRVTHARCGKL-SIALHVNVKNVGSRDGTHTLLVFSAPP 418
+SV + AN+ N S+ +I+V+H C + LHV V N G DGTHT+ VF+ PP
Sbjct: 643 LSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNTGEFDGTHTVFVFAEPP 702
Query: 417 DGGAHW-AVQKQLVAFEKVHVPAKSQQRVQINIHVCKLLSVVDRSGIRRIPMGEHSLHIG 241
G V KQL+AFEKVHV A ++Q VQ+++ CK L VVD G RRIPMGEH LHIG
Sbjct: 703 INGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDEYGKRRIPMGEHKLHIG 762
Query: 240 DVKHSVSLQ 214
D+KH++ +Q
Sbjct: 763 DLKHTILVQ 771
>ref|NP_201262.1| glycosyl hydrolase family 3; protein id: At5g64570.1 [Arabidopsis
thaliana] gi|10178060|dbj|BAB11424.1| beta-xylosidase
[Arabidopsis thaliana]
Length = 784
Score = 89.4 bits (220), Expect = 3e-17
Identities = 40/98 (40%), Positives = 65/98 (65%)
Frame = -2
Query: 507 GKLSIALHVNVKNVGSRDGTHTLLVFSAPPDGGAHWAVQKQLVAFEKVHVPAKSQQRVQI 328
G + +H+ V+N G R+G HT+ +F+ PP H + +K LV FEK+ + + + V+
Sbjct: 688 GGSAFEVHIKVRNGGDREGIHTVFLFTTPP--AIHGSPRKHLVGFEKIRLGKREEAVVRF 745
Query: 327 NIHVCKLLSVVDRSGIRRIPMGEHSLHIGDVKHSVSLQ 214
+ +CK LSVVD G R+I +G+H LH+GD+KHS+S++
Sbjct: 746 KVEICKDLSVVDEIGKRKIGLGKHLLHVGDLKHSLSIR 783
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,102,196
Number of Sequences: 1393205
Number of extensions: 10861315
Number of successful extensions: 25219
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25198
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
