Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005688A_C01 KMC005688A_c01
(321 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB99364.1| dJ131F15.1 (novel protein similar to KIAA0231) [... 30 6.2
>emb|CAB99364.1| dJ131F15.1 (novel protein similar to KIAA0231) [Homo sapiens]
Length = 50
Score = 30.4 bits (67), Expect = 6.2
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -3
Query: 160 SYHLFCVIIRDVMQKAFELGKTRFKENRQDVPDMKNV*L*HVHPAN 23
SY L+ ++ R + Q +FE+ R K N D+PD+KN +H AN
Sbjct: 4 SYRLWWMLRRSMKQYSFEV--LREKSNYSDIPDVKNDFAFILHLAN 47
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269,151,355
Number of Sequences: 1393205
Number of extensions: 5130804
Number of successful extensions: 11644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11642
length of database: 448,689,247
effective HSP length: 82
effective length of database: 334,446,437
effective search space used: 8026714488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
