Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005683A_C01 KMC005683A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_065153.1| similar to Olfactory receptor 10H3 [Homo sapien... 34 1.3
gb|AAK95071.1| olfactory receptor [Homo sapiens] 33 1.7
ref|NP_077923.1| unique hypothetical membrane lipoprotein [Ureap... 32 5.0
sp|Q14135|Y121_HUMAN Hypothetical protein KIAA0121 gi|6633997|db... 32 5.0
ref|NP_695120.1| putative tail protein [Streptococcus thermophil... 31 8.5
>ref|XP_065153.1| similar to Olfactory receptor 10H3 [Homo sapiens]
gi|21929103|dbj|BAC06136.1| seven transmembrane helix
receptor [Homo sapiens]
Length = 316
Score = 33.9 bits (76), Expect = 1.3
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Frame = -1
Query: 530 HNLLVPERVHLILLGPRSYLSV----PNPIN*VIGKHQVAIKVRCHNYFFFAFLSAFVHT 363
H L P + L L L P + ++ H V C N FF+F+ F H+
Sbjct: 54 HRLHTPMYLFLCTLSVSEILFTVAITPRMLADLLSTHHSITFVACANQMFFSFMFGFTHS 113
Query: 362 GFNVNALENTSRPLCCLAKYQVKRKKLSKVHLMHCSLLC*WVGGSGM 222
+ + +C +Y V HL+ C+ W GGS M
Sbjct: 114 FLLLVMGYDRYVAICHPLRYNVLMSPRDCAHLVACT----WAGGSVM 156
>gb|AAK95071.1| olfactory receptor [Homo sapiens]
Length = 217
Score = 33.5 bits (75), Expect = 1.7
Identities = 21/81 (25%), Positives = 33/81 (39%)
Frame = -1
Query: 464 PNPIN*VIGKHQVAIKVRCHNYFFFAFLSAFVHTGFNVNALENTSRPLCCLAKYQVKRKK 285
P + ++ H V C N FF+F+ F H+ + + +C +Y V
Sbjct: 12 PRMLADLLSTHHSITFVACANQMFFSFMFGFTHSFLLLVMGYDRYVAICHPLRYNVLMSP 71
Query: 284 LSKVHLMHCSLLC*WVGGSGM 222
HL+ C+ W GGS M
Sbjct: 72 RDCAHLVACT----WAGGSVM 88
>ref|NP_077923.1| unique hypothetical membrane lipoprotein [Ureaplasma urealyticum]
gi|11292842|pir||E82934 hypothetical protein UU092
[imported] - Ureaplasma urealyticum
gi|6899046|gb|AAF30498.1|AE002109_1 unique hypothetical
membrane lipoprotein [Ureaplasma urealyticum]
Length = 595
Score = 32.0 bits (71), Expect = 5.0
Identities = 23/66 (34%), Positives = 36/66 (53%), Gaps = 4/66 (6%)
Frame = -2
Query: 496 YYWDLG----AICLFQTPLIKSLASIKLQSKSDAIIISFLPFFQLLSIQGSMSMP*KIQA 329
YYW L IC LI SL ++KL +K +I+I F+ F LL+I ++ ++Q+
Sbjct: 143 YYWILSYISPFICYLIFGLITSLLALKLNAKI-SILIPFVSFIPLLTIGIIANLVSQVQS 201
Query: 328 DPFVVL 311
F+ L
Sbjct: 202 QAFLRL 207
>sp|Q14135|Y121_HUMAN Hypothetical protein KIAA0121 gi|6633997|dbj|BAA09470.2| KIAA0121
protein [Homo sapiens]
Length = 296
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 156 PFRRSHSPLQKKLSPTVKAH*SHSTTSHP 242
P RS SP+++ ++PTV H SH TS P
Sbjct: 103 PRERSRSPIERAVAPTVSLHGSHLYTSLP 131
>ref|NP_695120.1| putative tail protein [Streptococcus thermophilus temperate
bacteriophage O1205] gi|7521455|pir||T13331 probable
tail protein - Streptococcus phage phi-O1205
gi|2444121|gb|AAC79557.1| ORF42 [Streptococcus
thermophilus temperate bacteriophage O1205]
Length = 1006
Score = 31.2 bits (69), Expect = 8.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 233 LPPINTKENSASSELLTISSSLLDTWQDNKGVCLYFLRH 349
+PPI+ + S S+ LTI S W+++KG ++L +
Sbjct: 639 IPPIDVEVTSESTSALTIDSKRKQEWRNDKGQVEFYLEN 677
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,012,052
Number of Sequences: 1393205
Number of extensions: 9538940
Number of successful extensions: 19780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19772
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
