Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005682A_C01 KMC005682A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174273.1| unknown protein; protein id: At1g29800.1 [Arabi... 52 4e-06
dbj|BAC16013.1| contains ESTs AU062478(C11349),AU092192(C11349),... 37 0.15
gb|AAM60990.1| unknown [Arabidopsis thaliana] 32 3.8
ref|NP_189909.1| putative protein; protein id: At3g43230.1, supp... 32 3.8
ref|XP_126384.1| arachidonate 15-lipoxygenase, second type [Mus ... 32 6.5
>ref|NP_174273.1| unknown protein; protein id: At1g29800.1 [Arabidopsis thaliana]
gi|25054840|gb|AAN71910.1| unknown protein [Arabidopsis
thaliana]
Length = 510
Score = 52.4 bits (124), Expect = 4e-06
Identities = 29/51 (56%), Positives = 33/51 (63%)
Frame = -1
Query: 461 GAFVECSPEGSTVTTHTQENCCFYGSQSITATDILPSLLLDHPLPPFSSVL 309
GAFV CS EGS TT T EN FYGSQS+ A+DIL L P PP ++ L
Sbjct: 436 GAFVGCSLEGSIFTTRTSENSRFYGSQSLAASDILLGSL---PRPPAAAAL 483
>dbj|BAC16013.1| contains ESTs
AU062478(C11349),AU092192(C11349),
AU076219(R10022)~similar to senescence-associated
putative protein [Oryza sativa (japonica
cultivar-group)] gi|24060033|dbj|BAC21490.1| contains
ESTs
AU062478(C11349),AU092192(C11349),
AU076219(R10022)~similar to senescence-associated
putative protein [Oryza sativa (japonica
cultivar-group)]
Length = 461
Score = 37.0 bits (84), Expect = 0.15
Identities = 18/34 (52%), Positives = 22/34 (63%)
Frame = -1
Query: 458 AFVECSPEGSTVTTHTQENCCFYGSQSITATDIL 357
AFV S EG+ VTT ++ N FYG +T TDIL
Sbjct: 402 AFVGVSLEGNVVTTRSETNLRFYGDAYLTTTDIL 435
>gb|AAM60990.1| unknown [Arabidopsis thaliana]
Length = 486
Score = 32.3 bits (72), Expect = 3.8
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = -1
Query: 461 GAFVECSPEGSTVTTHTQENCCFYGSQSITATDILPSLLLDHP 333
GAFV S EG+ V T N FYG ++ +DIL ++D P
Sbjct: 426 GAFVGVSLEGNLVATRRDMNVKFYGDPYLSTSDILLG-MVDQP 467
>ref|NP_189909.1| putative protein; protein id: At3g43230.1, supported by cDNA:
107823., supported by cDNA: gi_17979084, supported by
cDNA: gi_20465340 [Arabidopsis thaliana]
gi|11357848|pir||T49237 hypothetical protein F7K15.80 -
Arabidopsis thaliana gi|7649363|emb|CAB89044.1| putative
protein [Arabidopsis thaliana]
gi|17979085|gb|AAL49810.1| unknown protein [Arabidopsis
thaliana] gi|20465341|gb|AAM20074.1| unknown protein
[Arabidopsis thaliana]
Length = 485
Score = 32.3 bits (72), Expect = 3.8
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = -1
Query: 461 GAFVECSPEGSTVTTHTQENCCFYGSQSITATDILPSLLLDHP 333
GAFV S EG+ V T N FYG ++ +DIL ++D P
Sbjct: 425 GAFVGVSLEGNLVATRRDMNVKFYGDPYLSTSDILLG-MVDQP 466
>ref|XP_126384.1| arachidonate 15-lipoxygenase, second type [Mus musculus]
gi|25057257|ref|XP_203460.1| arachidonate
15-lipoxygenase, second type [Mus musculus]
gi|12230223|sp|O35936|LX1B_MOUSE Arachidonate
15-lipoxygenase, type II (15-LOX-2) (8S-lipoxygenase)
(8S-LOX) gi|2439987|gb|AAC53356.1| 8S-lipoxygenase [Mus
musculus] gi|3036864|emb|CAA75003.1| arachidonate
8(S)-lipoxygenase [Mus musculus]
gi|15929637|gb|AAH15253.1| Unknown (protein for
MGC:18359) [Mus musculus] gi|26324662|dbj|BAC26085.1|
unnamed protein product [Mus musculus]
Length = 677
Score = 31.6 bits (70), Expect = 6.5
Identities = 15/33 (45%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -2
Query: 496 VKSTFFFLHELQVHLLNAHL-KEVRSLLTLKKI 401
V+++ F++HE HLL+AHL EV +L TL+++
Sbjct: 361 VRNSEFYIHEAVTHLLHAHLIPEVFALATLRQL 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,888,935
Number of Sequences: 1393205
Number of extensions: 9341605
Number of successful extensions: 20001
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19997
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
