Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005681A_C01 KMC005681A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM14093.1| putative bystin [Arabidopsis thaliana] gi|2839285... 128 7e-29
ref|NP_174447.1| bystin, putative; protein id: At1g31660.1 [Arab... 127 1e-28
ref|NP_511074.1| by S6 CG1430-PA gi|12644015|sp|P51406|BYS_DROME... 75 1e-12
gb|EAA07612.1| agCP1316 [Anopheles gambiae str. PEST] 72 5e-12
sp|O54825|BYST_MOUSE Bystin gi|17028426|gb|AAH17530.1| Similar t... 64 1e-09
>gb|AAM14093.1| putative bystin [Arabidopsis thaliana] gi|28392856|gb|AAO41865.1|
putative bystin [Arabidopsis thaliana]
Length = 444
Score = 128 bits (321), Expect = 7e-29
Identities = 62/102 (60%), Positives = 79/102 (76%)
Frame = -3
Query: 644 AHFMKFLNETRIMPVIWHQSLLTFAQRYKHELQKEQKDNLKFLLEKQKHKLVTPAISKEL 465
AHFM+F+++ R+MPVIWHQSLLTF QRYK+E+ KE K++L+ LL++QKH LVTP I +EL
Sbjct: 348 AHFMRFVDDIRVMPVIWHQSLLTFVQRYKYEILKEDKEHLQTLLQRQKHHLVTPEILREL 407
Query: 464 NHSRNRGEKEDDLMSISVPVSMLIKPIEEKRDEIPEVPMEED 339
SRNRGEKED ++ PV P +E R +IPEVPMEED
Sbjct: 408 KDSRNRGEKEDPMVDNFAPV-----PAKEDRFDIPEVPMEED 444
>ref|NP_174447.1| bystin, putative; protein id: At1g31660.1 [Arabidopsis thaliana]
gi|12597848|gb|AAG60158.1|AC074360_23 bystin, putative
[Arabidopsis thaliana]
Length = 442
Score = 127 bits (319), Expect = 1e-28
Identities = 62/102 (60%), Positives = 79/102 (76%)
Frame = -3
Query: 644 AHFMKFLNETRIMPVIWHQSLLTFAQRYKHELQKEQKDNLKFLLEKQKHKLVTPAISKEL 465
AHFM+F+++ R+MPVIWHQSLLTF QRYK+E+ KE K++L+ LL++QKH LVTP I +EL
Sbjct: 348 AHFMRFVDDIRVMPVIWHQSLLTFVQRYKYEILKEDKEHLQTLLQRQKHHLVTPEILREL 407
Query: 464 NHSRNRGEKEDDLMSISVPVSMLIKPIEEKRDEIPEVPMEED 339
SRNRGEKED P+S+ P +E R +IPEVPMEED
Sbjct: 408 KDSRNRGEKED-------PMSLAPVPAKEDRFDIPEVPMEED 442
>ref|NP_511074.1| by S6 CG1430-PA gi|12644015|sp|P51406|BYS_DROME Bys protein
gi|7290847|gb|AAF46289.1| CG1430-PA [Drosophila
melanogaster] gi|16769010|gb|AAL28724.1| LD14510p
[Drosophila melanogaster]
Length = 436
Score = 74.7 bits (182), Expect = 1e-12
Identities = 32/59 (54%), Positives = 46/59 (77%)
Frame = -3
Query: 641 HFMKFLNETRIMPVIWHQSLLTFAQRYKHELQKEQKDNLKFLLEKQKHKLVTPAISKEL 465
HF++F N+ R +PV+WHQSLLTFAQRYK+++ EQ+D L LL+K+ H +TP + +EL
Sbjct: 344 HFLRFENDKRELPVLWHQSLLTFAQRYKNDISSEQRDALLQLLKKKSHFKITPDVRREL 402
>gb|EAA07612.1| agCP1316 [Anopheles gambiae str. PEST]
Length = 426
Score = 72.4 bits (176), Expect = 5e-12
Identities = 31/65 (47%), Positives = 47/65 (71%)
Frame = -3
Query: 641 HFMKFLNETRIMPVIWHQSLLTFAQRYKHELQKEQKDNLKFLLEKQKHKLVTPAISKELN 462
HF+KF + R +P +WH++LLTFAQRYK+++ EQ+D L LL+K+ H +TP I +EL
Sbjct: 358 HFLKFEQDKRELPTLWHKALLTFAQRYKNDISSEQRDALLHLLKKKSHPKITPEIRRELQ 417
Query: 461 HSRNR 447
++ R
Sbjct: 418 AAQCR 422
>sp|O54825|BYST_MOUSE Bystin gi|17028426|gb|AAH17530.1| Similar to bystin-like [Mus
musculus] gi|26328759|dbj|BAC28118.1| unnamed protein
product [Mus musculus] gi|26339880|dbj|BAC33603.1|
unnamed protein product [Mus musculus]
gi|26342130|dbj|BAC34727.1| unnamed protein product [Mus
musculus] gi|26350193|dbj|BAC38736.1| unnamed protein
product [Mus musculus] gi|26385989|dbj|BAB31619.2|
unnamed protein product [Mus musculus]
Length = 303
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/59 (52%), Positives = 39/59 (65%)
Frame = -3
Query: 641 HFMKFLNETRIMPVIWHQSLLTFAQRYKHELQKEQKDNLKFLLEKQKHKLVTPAISKEL 465
HF+ F E R +PV+WHQ LLT AQRYK +L EQK+ L LL Q H ++P I +EL
Sbjct: 229 HFLAFRTEKRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRLQPHPQLSPEIRREL 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,375,005
Number of Sequences: 1393205
Number of extensions: 11856095
Number of successful extensions: 32688
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 31442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32635
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
