Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005678A_C01 KMC005678A_c01
(1045 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM14957.1| hypothetical protein [Arabidopsis thaliana] 401 e-110
ref|NP_194534.1| senescence-associated protein -like; protein id... 371 e-101
gb|AAC34855.1| senescence-associated protein 5 [Hemerocallis hyb... 367 e-100
ref|NP_194772.1| senescence-associated protein homolog; protein ... 353 3e-96
gb|AAO72638.1| senescence-associated protein-like protein [Oryza... 347 2e-94
>gb|AAM14957.1| hypothetical protein [Arabidopsis thaliana]
Length = 273
Score = 401 bits (1030), Expect = e-110
Identities = 179/269 (66%), Positives = 223/269 (82%)
Frame = -1
Query: 1006 MVKFFNSVIGILNLLTLVLSIPILIAGVWLSKQANTECERWLEKPVIALGVFLLIVSLAG 827
M + N+++GILN L +LSIPIL G+WLS++ +TECER+L+KPVIALGVFL++V++AG
Sbjct: 1 MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60
Query: 826 LIGACCRVSWLLWVYLLVMFVLIVLLFAFTIFAFVVTNKGAGEALSNKGYKEYRLGGYSD 647
LIG+CCRV+WLLWVYL VMF+LI+L+F T+FAFVVTNKGAGEA+ KGYKEY+LG YS
Sbjct: 61 LIGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYST 120
Query: 646 WLQKRVNNDNNWNRIRSCLQSGKVCSDFKSKFLNDTVDKFYTENLSALQSGCCKPSDDCN 467
WLQKRV N NWN+IRSCL KVCS ++KF+N V+ FY E+L+ALQSGCCKPSD+C
Sbjct: 121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECG 180
Query: 466 FTYENPTTWTKPANATYTNTDCDAWNNDQTILCFNCQSCKAGLLQNIKTDWKKVAVVNII 287
F Y NPTTWTK T+TN DC W+N + LCF+CQSCKAGLL N+K+ WKKVA+VNI+
Sbjct: 181 FEYVNPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIV 240
Query: 286 FLIFLIIVYSVGCCAFRNSRRDNSNWKRY 200
FL+FLIIVYSVGCCAFRN++RD+S + Y
Sbjct: 241 FLVFLIIVYSVGCCAFRNNKRDDSYSRTY 269
>ref|NP_194534.1| senescence-associated protein -like; protein id: At4g28050.1,
supported by cDNA: 39831., supported by cDNA:
gi_17065395, supported by cDNA: gi_20148628 [Arabidopsis
thaliana] gi|7488327|pir||T02906 senescence-associated
protein homolog T13J8.160 - Arabidopsis thaliana
gi|4455364|emb|CAB36774.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|7269659|emb|CAB79607.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|17065396|gb|AAL32852.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|20148629|gb|AAM10205.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|21593528|gb|AAM65495.1| senescence-associated
protein-like [Arabidopsis thaliana]
Length = 263
Score = 371 bits (952), Expect = e-101
Identities = 168/261 (64%), Positives = 209/261 (79%)
Frame = -1
Query: 1006 MVKFFNSVIGILNLLTLVLSIPILIAGVWLSKQANTECERWLEKPVIALGVFLLIVSLAG 827
MV+ N+++GILN T +LSIPIL AG+WL K A TECER+L+KP++ LG+FL+ VS+AG
Sbjct: 1 MVQCSNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAG 60
Query: 826 LIGACCRVSWLLWVYLLVMFVLIVLLFAFTIFAFVVTNKGAGEALSNKGYKEYRLGGYSD 647
L+GACCRVS LLW+YL MF+LI+L F FTIFAF VTN+GAGE +S++GYKEY + YS+
Sbjct: 61 LVGACCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSN 120
Query: 646 WLQKRVNNDNNWNRIRSCLQSGKVCSDFKSKFLNDTVDKFYTENLSALQSGCCKPSDDCN 467
WLQKRVNN NW RIRSCL VCS +++++ + V+ FY NL+ALQSGCCKPS+DCN
Sbjct: 121 WLQKRVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQSGCCKPSNDCN 180
Query: 466 FTYENPTTWTKPANATYTNTDCDAWNNDQTILCFNCQSCKAGLLQNIKTDWKKVAVVNII 287
FTY NPTTWTK Y N DC+ W+N LC++C++CKAGLL NIK WKKVA VNI+
Sbjct: 181 FTYVNPTTWTK-TPGPYKNEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIV 239
Query: 286 FLIFLIIVYSVGCCAFRNSRR 224
FLIFLIIVYSVGCCAFRN+R+
Sbjct: 240 FLIFLIIVYSVGCCAFRNNRK 260
>gb|AAC34855.1| senescence-associated protein 5 [Hemerocallis hybrid cultivar]
Length = 275
Score = 367 bits (942), Expect = e-100
Identities = 167/270 (61%), Positives = 211/270 (77%), Gaps = 3/270 (1%)
Frame = -1
Query: 1006 MVKFFNSVIGILNLLTLVLSIPILIAGVWLSKQANTECERWLEKPVIALGVFLLIVSLAG 827
M + N+++GILN +TL+L+IPIL GV+LS ++T+C +L+ P++ LG+ LL+VSLAG
Sbjct: 3 MFRLSNNLVGILNFVTLLLTIPILSTGVYLSHHSSTDCAHFLQGPILGLGIVLLLVSLAG 62
Query: 826 LIGACCRVSWLLWVYLLVMFVLIVLLFAFTIFAFVVTNKGAGEALSNKGYKEYRLGGYSD 647
L+GACC+ S LLW+YL VMFVLI+++F FTIF FVVTNKGAGE +S +GYK+YRLG YS
Sbjct: 63 LVGACCKNSLLLWIYLFVMFVLIIVIFCFTIFVFVVTNKGAGEVVSGRGYKDYRLGDYSH 122
Query: 646 WLQKRVNNDNNWNRIRSCLQSGKVCSDFKSKFLNDTVDKFYTENLSALQSGCCKPSDDCN 467
WLQKR+ N NW +IRSCL GKVC F + N T+D+F ENLS +QSGCCKP +C
Sbjct: 123 WLQKRMENGKNWRKIRSCLVDGKVCERFSTDGTNRTLDQFVKENLSPIQSGCCKPPTECG 182
Query: 466 FTYENPTTWTKPANA-TYTNTDCDAWNNDQTILCFNCQSCKAGLLQNIKTDWKKVAVVNI 290
FTY++PT W KPA T NTDC W ND TILC++CQSCK G++ N+K+ WKKVAVVNI
Sbjct: 183 FTYQSPTVWNKPATGFTSNNTDCATWENDPTILCYDCQSCKGGVIANLKSKWKKVAVVNI 242
Query: 289 IFLIFLIIVYSVGCCAFRNSRRDN--SNWK 206
IFLIF+IIVYSVGCCAFRN+ +DN S WK
Sbjct: 243 IFLIFIIIVYSVGCCAFRNNLKDNAYSGWK 272
>ref|NP_194772.1| senescence-associated protein homolog; protein id: At4g30430.1,
supported by cDNA: 122632. [Arabidopsis thaliana]
gi|25352435|pir||H85355 senescence-associated protein
homolog [imported] - Arabidopsis thaliana
gi|7269944|emb|CAB79761.1| senescence-associated protein
homolog [Arabidopsis thaliana]
Length = 272
Score = 353 bits (905), Expect = 3e-96
Identities = 153/262 (58%), Positives = 206/262 (78%)
Frame = -1
Query: 1006 MVKFFNSVIGILNLLTLVLSIPILIAGVWLSKQANTECERWLEKPVIALGVFLLIVSLAG 827
MV+F NS++GILN +LS+PIL G+WLS +A T+CER+L+KP+IALGVFL+I+++AG
Sbjct: 1 MVRFSNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAG 60
Query: 826 LIGACCRVSWLLWVYLLVMFVLIVLLFAFTIFAFVVTNKGAGEALSNKGYKEYRLGGYSD 647
++G+CCRV+WLLW YL VMF LI+++ FTIFAFVVT+KG+GE + K YKEYRL YSD
Sbjct: 61 VVGSCCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSD 120
Query: 646 WLQKRVNNDNNWNRIRSCLQSGKVCSDFKSKFLNDTVDKFYTENLSALQSGCCKPSDDCN 467
WLQ+RVNN +WN IRSCL K C + + N TV FY E+L+A +SGCCKPS+DC+
Sbjct: 121 WLQRRVNNAKHWNSIRSCLYESKFCYNLELVTANHTVSDFYKEDLTAFESGCCKPSNDCD 180
Query: 466 FTYENPTTWTKPANATYTNTDCDAWNNDQTILCFNCQSCKAGLLQNIKTDWKKVAVVNII 287
FTY TTW K + T+ N+DC W+N++ LC+NC++CKAG L N+K WK+VA+VNII
Sbjct: 181 FTYITSTTWNK-TSGTHKNSDCQLWDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNII 239
Query: 286 FLIFLIIVYSVGCCAFRNSRRD 221
FL+ L++VY++GCCAFRN++ D
Sbjct: 240 FLVLLVVVYAMGCCAFRNNKED 261
>gb|AAO72638.1| senescence-associated protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 276
Score = 347 bits (890), Expect = 2e-94
Identities = 163/260 (62%), Positives = 206/260 (78%), Gaps = 2/260 (0%)
Frame = -1
Query: 991 NSVIGILNLLTLVLSIPILIAGVWLSKQAN-TECERWLEKPVIALGVFLLIVSLAGLIGA 815
NS++GILN +T +LS+P+L G+WL+ +A+ TECER+ PVIA GVFLL+VSLAGL+GA
Sbjct: 7 NSLLGILNAVTFLLSVPVLGGGIWLATRADGTECERYFSAPVIAFGVFLLLVSLAGLVGA 66
Query: 814 CCRVSWLLWVYLLVMFVLIVLLFAFTIFAFVVTNKGAGEALSNKGYKEYRLGGYSDWLQK 635
CCRV+ LLW YL+ MFVLIV+LF FT+FAFVVTNKGAGEA+S +GYKEYRLG YS+WLQK
Sbjct: 67 CCRVNCLLWFYLVAMFVLIVVLFCFTVFAFVVTNKGAGEAVSGRGYKEYRLGDYSNWLQK 126
Query: 634 RVNNDNNWNRIRSCLQSGKVCSDFKSKFLNDTVDKFYTENLSALQSGCCKPSDDCNFTYE 455
R+ N NWNRIRSCLQ KVC + K + T +F+ +LS L+SGCCKP CNF Y
Sbjct: 127 RMENSKNWNRIRSCLQDSKVCKKLQDKNWDRT--QFFKADLSPLESGCCKPPSSCNFLYV 184
Query: 454 NPTTWTK-PANATYTNTDCDAWNNDQTILCFNCQSCKAGLLQNIKTDWKKVAVVNIIFLI 278
+ T WTK P N+ ++ DC+ W +D T LC+NCQSCKAG + +K DWK+VAVV I+FL+
Sbjct: 185 SGTNWTKVPTNS--SDPDCNTWVDDGTQLCYNCQSCKAGAVATLKRDWKRVAVVCIVFLV 242
Query: 277 FLIIVYSVGCCAFRNSRRDN 218
F++IVYS+GCCAFRN+RRDN
Sbjct: 243 FIVIVYSLGCCAFRNNRRDN 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 902,426,204
Number of Sequences: 1393205
Number of extensions: 20931141
Number of successful extensions: 105615
Number of sequences better than 10.0: 248
Number of HSP's better than 10.0 without gapping: 77346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94116
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61532797421
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
