Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005677A_C01 KMC005677A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD52096.2|AF088979_1 beige protein homolog [Dictyostelium di... 34 1.3
gb|AAD28358.1|AF079967_2 MURF1 [Phytomonas serpens] 33 2.9
ref|XP_220750.1| similar to hypothetical protein FLJ12735 [Homo ... 33 3.8
ref|XP_030892.2| similar to zinc finger protein 347; zinc finger... 33 3.8
ref|XP_221576.1| similar to olfactory receptor MOR182-3 [Mus mus... 33 3.8
>gb|AAD52096.2|AF088979_1 beige protein homolog [Dictyostelium discoideum]
Length = 3619
Score = 34.3 bits (77), Expect = 1.3
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 343 QLTLPELCTDEHWPDASPVDISSRDSTFGPILERSAEQSALSSNPA 480
+++ PEL ++E P SPV SS D P L+ S + LS NP+
Sbjct: 2664 KVSSPELSSNEITPPTSPVQSSSEDVFKSPKLQSSTVEGQLSRNPS 2709
>gb|AAD28358.1|AF079967_2 MURF1 [Phytomonas serpens]
Length = 441
Score = 33.1 bits (74), Expect = 2.9
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = -1
Query: 266 LLIHRMLHIFPTVSWLCSILGLYYYAICTLLWLFVSSQRLCFIL*DIVFCYV*CLILCYV 87
L I + IF + +L I + Y I +LW + + F+L I+ Y L CY
Sbjct: 98 LYISILFEIFSLLVFLLLISSRFGYKIL-ILWYYYMINLISFLLL-IILLYFMVLNYCYY 155
Query: 86 PVHRCQTAHAEPWLCCICVIYV 21
C E WL +C++Y+
Sbjct: 156 LCDFCFLIFDEEWLGILCLMYI 177
>ref|XP_220750.1| similar to hypothetical protein FLJ12735 [Homo sapiens] [Rattus
norvegicus]
Length = 1717
Score = 32.7 bits (73), Expect = 3.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 473 FEDSADCSADLSKIGPNVESLDEISTGEASGQCSSVQSSGS---VNCLPNPPKRLKAKGC 303
F+ S D S +L + P S +E +T G +++ + LP PPK L K C
Sbjct: 1452 FDTSLDFSGELPSLSPAASSSEEDNTSRDRGSNPEIKTQNKGFKPHSLPQPPKTLAEKKC 1511
>ref|XP_030892.2| similar to zinc finger protein 347; zinc finger 1111 [Homo sapiens]
Length = 781
Score = 32.7 bits (73), Expect = 3.8
Identities = 22/101 (21%), Positives = 43/101 (41%), Gaps = 1/101 (0%)
Frame = -1
Query: 542 DESKVQTPHKMVIAGKFPKTSAGFEDSADCSADL-SKIGPNVESLDEISTGEASGQCSSV 366
++ +V PH+ + GK + S G ++ L S + L ++ T +C+
Sbjct: 107 NDKEVPVPHENNLTGKRDQHSQGDVENNHIENQLTSNFESRLAELQKVQTEGRLYECNET 166
Query: 365 QSSGSVNCLPNPPKRLKAKGCQIGA*VNPSLKQLLIHRMLH 243
+ +G+ CL +P R K C + L+ H+ +H
Sbjct: 167 EKTGNNGCLVSPHIREKTYVCNECGKAFKASSSLINHQRIH 207
>ref|XP_221576.1| similar to olfactory receptor MOR182-3 [Mus musculus] [Rattus
norvegicus]
Length = 261
Score = 32.7 bits (73), Expect = 3.8
Identities = 32/104 (30%), Positives = 49/104 (46%), Gaps = 1/104 (0%)
Frame = -1
Query: 443 LSKIGPNVESLDEISTGEASGQCSSVQSSGSVNCLPNPPKRLKAKGCQIGA*VNPSLKQL 264
L+ P+VE ++S AS +C+S S VNC+ + + L A+ + + +
Sbjct: 3 LASTAPHVEG--QVSQDGASLRCASWPPSQEVNCV-HVQECLPARSLAFRGVPDEIMSKQ 59
Query: 263 LIHRMLHIFPTVSWLCSILGLYYYAICT-LLWLFVSSQRLCFIL 135
I IF V+ Y AIC LL+L V S+RLC +L
Sbjct: 60 PISATTEIFLLVAMAYD----RYVAICNPLLYLVVMSKRLCTVL 99
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,804,409
Number of Sequences: 1393205
Number of extensions: 9937553
Number of successful extensions: 25036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25001
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
