Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005675A_C01 KMC005675A_c01
(1003 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178191.1| nodulin-like protein; protein id: At1g80760.1 [... 96 7e-19
gb|AAG13499.1|AC068924_4 putative nodulin-26 [Oryza sativa (japo... 90 5e-17
ref|NP_192776.1| major intrinsic protein (MIP) - like; protein i... 88 2e-16
gb|AAK26753.1| NOD26-like membrane integral protein ZmNIP3-1 [Ze... 87 5e-16
dbj|BAB12437.1| MIP [Adiantum capillus-veneris] 75 2e-12
>ref|NP_178191.1| nodulin-like protein; protein id: At1g80760.1 [Arabidopsis
thaliana] gi|25301312|pir||B96840 hypothetical protein
F23A5.11 [imported] - Arabidopsis thaliana
gi|6503288|gb|AAF14664.1|AC011713_12 Similar to
gb|D17443 major intrinsic protein from Oryza sativa.
EST gb|AI998369 comes from this gene. [Arabidopsis
thaliana]
Length = 305
Score = 96.3 bits (238), Expect = 7e-19
Identities = 46/58 (79%), Positives = 49/58 (84%)
Frame = -2
Query: 813 ILYCRPETGASMNPVRTLGPAIAANNYKAIWVYLVAPVLGALSGAGIYTAVKLPDEDE 640
IL P T ASMNPVRTLGPAIAANNY+AIWVYL AP+LGAL GAG YT VKLP+EDE
Sbjct: 238 ILIAGPATSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTYTIVKLPEEDE 295
>gb|AAG13499.1|AC068924_4 putative nodulin-26 [Oryza sativa (japonica cultivar-group)]
Length = 241
Score = 90.1 bits (222), Expect = 5e-17
Identities = 43/73 (58%), Positives = 55/73 (74%)
Frame = -2
Query: 813 ILYCRPETGASMNPVRTLGPAIAANNYKAIWVYLVAPVLGALSGAGIYTAVKLPDEDEDS 634
IL P TG SMNPVRTLGPA+AA NY+ +W+YL+AP LGA++GAG+YTAVKL DE+ ++
Sbjct: 173 ILIAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLIAPTLGAVAGAGVYTAVKLRDENGET 232
Query: 633 AKVVGSNHPSFRR 595
+ SFRR
Sbjct: 233 PR----PQRSFRR 241
>ref|NP_192776.1| major intrinsic protein (MIP) - like; protein id: At4g10380.1,
supported by cDNA: 36655. [Arabidopsis thaliana]
gi|7487974|pir||T04053 nodulin-26 homolog F24G24.180 -
Arabidopsis thaliana gi|4538967|emb|CAB39791.1| major
intrinsic protein (MIP)-like [Arabidopsis thaliana]
gi|7267735|emb|CAB78161.1| major intrinsic protein
(MIP)-like [Arabidopsis thaliana]
gi|21593153|gb|AAM65102.1| major intrinsic protein
(MIP)-like protein [Arabidopsis thaliana]
Length = 304
Score = 87.8 bits (216), Expect = 2e-16
Identities = 44/73 (60%), Positives = 52/73 (70%)
Frame = -2
Query: 813 ILYCRPETGASMNPVRTLGPAIAANNYKAIWVYLVAPVLGALSGAGIYTAVKLPDEDEDS 634
IL P TG SMNPVRTLGPA+A+ NY+++WVYLVAP LGA+SGA +YT VKL D D
Sbjct: 236 ILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDSVTDP 295
Query: 633 AKVVGSNHPSFRR 595
+ V SFRR
Sbjct: 296 PRPV----RSFRR 304
>gb|AAK26753.1| NOD26-like membrane integral protein ZmNIP3-1 [Zea mays]
Length = 302
Score = 86.7 bits (213), Expect = 5e-16
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = -2
Query: 813 ILYCRPETGASMNPVRTLGPAIAANNYKAIWVYLVAPVLGALSGAGIYTAVKLPDEDEDS 634
IL P TG SMNPVRTLGPA+AA NY+ +W+YL+AP LGAL+GA +Y AVKL DE+ ++
Sbjct: 234 ILVAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLLAPTLGALAGASVYKAVKLRDENGET 293
Query: 633 AKVVGSNHPSFRR 595
+ SFRR
Sbjct: 294 PR----TQRSFRR 302
>dbj|BAB12437.1| MIP [Adiantum capillus-veneris]
Length = 282
Score = 75.1 bits (183), Expect = 2e-12
Identities = 33/71 (46%), Positives = 51/71 (71%)
Frame = -2
Query: 810 LYCRPETGASMNPVRTLGPAIAANNYKAIWVYLVAPVLGALSGAGIYTAVKLPDEDEDSA 631
++ P GASMNP R++GPA+A+ ++K++WVY+V P+LG L GA YT +KLP++ +D A
Sbjct: 209 IFAGPICGASMNPARSIGPAVASYDFKSLWVYIVGPILGCLLGAWSYTMIKLPEQPQDLA 268
Query: 630 KVVGSNHPSFR 598
+ S SF+
Sbjct: 269 MI--SQSKSFK 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 878,870,353
Number of Sequences: 1393205
Number of extensions: 20489579
Number of successful extensions: 60709
Number of sequences better than 10.0: 386
Number of HSP's better than 10.0 without gapping: 57667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60600
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57669751843
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
