Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005671A_C01 KMC005671A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09467.1| exo galactanase [Lupinus angustifolius] 242 2e-63
emb|CAA06309.1| beta-galactosidase [Cicer arietinum] 238 4e-62
gb|AAF67341.1| beta galactosidase [Vigna radiata] 238 5e-62
gb|AAB61470.1| beta-D-galactosidase [Mangifera indica] 230 8e-60
emb|CAA09457.1| beta-galactosidase [Cicer arietinum] 229 2e-59
>emb|CAA09467.1| exo galactanase [Lupinus angustifolius]
Length = 730
Score = 242 bits (617), Expect = 2e-63
Identities = 113/146 (77%), Positives = 129/146 (87%)
Frame = +3
Query: 114 GSRILIMMES*MRRSKFHVLVFMWFCSWFCYVTASVTYDHKAILVDGKRRISISGSIHYP 293
GSRI+ MES M R FH+++ + F W CYVTASVTYDHKAI+++G+RRI ISGSIHYP
Sbjct: 3 GSRIV--MESLMSRRNFHMVLLLLFF-WVCYVTASVTYDHKAIMINGQRRILISGSIHYP 59
Query: 294 RSTPQMWPDLIQKAKDGGIDVIQTYVFGNGHEPSPGNYYFEDRLDLVKFIKIVQQAGLYV 473
RSTPQMWPDLIQKAKDGG+DVI+TYVF NGHEPSPG YYFEDR DLV FIK+VQQAGL+V
Sbjct: 60 RSTPQMWPDLIQKAKDGGLDVIETYVFWNGHEPSPGKYYFEDRFDLVGFIKLVQQAGLFV 119
Query: 474 NLRIGPYVCAEWNLGGFPVWLKYVPG 551
+LRIGP++CAEWN GGFPVWLKYVPG
Sbjct: 120 HLRIGPFICAEWNFGGFPVWLKYVPG 145
>emb|CAA06309.1| beta-galactosidase [Cicer arietinum]
Length = 730
Score = 238 bits (607), Expect = 4e-62
Identities = 111/141 (78%), Positives = 125/141 (87%), Gaps = 2/141 (1%)
Frame = +3
Query: 135 MES*MRRSKFHVLV--FMWFCSWFCYVTASVTYDHKAILVDGKRRISISGSIHYPRSTPQ 308
MES R KF++++ ++ C + VTASVTYDHKAI+++G+RRI ISGSIHYPRSTPQ
Sbjct: 1 MESLTRWRKFYMVIGLVLFLCLFVFSVTASVTYDHKAIVINGQRRILISGSIHYPRSTPQ 60
Query: 309 MWPDLIQKAKDGGIDVIQTYVFGNGHEPSPGNYYFEDRLDLVKFIKIVQQAGLYVNLRIG 488
MWPDLIQKAKDGG+DVIQTYVF NGHEPSPGNYYFEDR DLVKF+K+VQQAGLYVNLRIG
Sbjct: 61 MWPDLIQKAKDGGVDVIQTYVFWNGHEPSPGNYYFEDRFDLVKFVKVVQQAGLYVNLRIG 120
Query: 489 PYVCAEWNLGGFPVWLKYVPG 551
PYVCAEWN GGFPVWLKYVPG
Sbjct: 121 PYVCAEWNFGGFPVWLKYVPG 141
>gb|AAF67341.1| beta galactosidase [Vigna radiata]
Length = 721
Score = 238 bits (606), Expect = 5e-62
Identities = 108/135 (80%), Positives = 118/135 (87%)
Frame = +3
Query: 147 MRRSKFHVLVFMWFCSWFCYVTASVTYDHKAILVDGKRRISISGSIHYPRSTPQMWPDLI 326
M + +FH V M W C VTASVTYDHKAI++DGKRRI ISGSIHYPRSTPQMWPDLI
Sbjct: 1 MGKGEFHGGVLMLLFFWVCGVTASVTYDHKAIVIDGKRRILISGSIHYPRSTPQMWPDLI 60
Query: 327 QKAKDGGIDVIQTYVFGNGHEPSPGNYYFEDRLDLVKFIKIVQQAGLYVNLRIGPYVCAE 506
QKAKDGG+DVIQTYVF NGHEPSPG YYFEDR DLV+F+K+ QQAGLYV+LRIGPY+CAE
Sbjct: 61 QKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVRFVKLAQQAGLYVHLRIGPYICAE 120
Query: 507 WNLGGFPVWLKYVPG 551
WN GGFPVWLKYVPG
Sbjct: 121 WNFGGFPVWLKYVPG 135
>gb|AAB61470.1| beta-D-galactosidase [Mangifera indica]
Length = 663
Score = 230 bits (587), Expect = 8e-60
Identities = 105/128 (82%), Positives = 117/128 (91%)
Frame = +3
Query: 168 VLVFMWFCSWFCYVTASVTYDHKAILVDGKRRISISGSIHYPRSTPQMWPDLIQKAKDGG 347
+L+ M F SW C+V A+V+YDHKAI++DG+RRI ISGSIHYPRSTPQMWPDLIQKAKDG
Sbjct: 17 MLLLMLFSSWVCFVEATVSYDHKAIIIDGQRRILISGSIHYPRSTPQMWPDLIQKAKDG- 75
Query: 348 IDVIQTYVFGNGHEPSPGNYYFEDRLDLVKFIKIVQQAGLYVNLRIGPYVCAEWNLGGFP 527
+DVIQTYVF NGHEPSPG YYFEDR DLV+FIK+VQQAGLYV+LRIGPYVCAEWN GGFP
Sbjct: 76 VDVIQTYVFWNGHEPSPGKYYFEDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNFGGFP 135
Query: 528 VWLKYVPG 551
VWLKYVPG
Sbjct: 136 VWLKYVPG 143
>emb|CAA09457.1| beta-galactosidase [Cicer arietinum]
Length = 723
Score = 229 bits (584), Expect = 2e-59
Identities = 104/134 (77%), Positives = 117/134 (86%), Gaps = 1/134 (0%)
Frame = +3
Query: 153 RSKFHVL-VFMWFCSWFCYVTASVTYDHKAILVDGKRRISISGSIHYPRSTPQMWPDLIQ 329
R +F++L + + C W C VTASVTYDHK I++DG+RRI ISGSIHYPRSTP+MWP L Q
Sbjct: 2 RKEFNLLGLMLLLCFWVCAVTASVTYDHKTIVIDGQRRILISGSIHYPRSTPEMWPALFQ 61
Query: 330 KAKDGGIDVIQTYVFGNGHEPSPGNYYFEDRLDLVKFIKIVQQAGLYVNLRIGPYVCAEW 509
KAK+GG+DVIQTYVF NGHEPSPG YYFEDR DLVKFIK+ QQAGLYV+LRIGPYVCAEW
Sbjct: 62 KAKEGGLDVIQTYVFWNGHEPSPGKYYFEDRFDLVKFIKLAQQAGLYVHLRIGPYVCAEW 121
Query: 510 NLGGFPVWLKYVPG 551
N GGFPVWLKYVPG
Sbjct: 122 NFGGFPVWLKYVPG 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,895,876
Number of Sequences: 1393205
Number of extensions: 11598221
Number of successful extensions: 27929
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 27263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27889
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
