Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005668A_C01 KMC005668A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200134.1| unknown protein; protein id: At5g53220.1 [Arabi... 92 3e-18
dbj|BAB59028.1| ABC transporter PMR5 [Penicillium digitatum] 35 0.46
ref|XP_235609.1| similar to hypothetical protein FLJ31937 [Homo ... 32 6.7
ref|NP_573313.2| CG6606-PA [Drosophila melanogaster] gi|7293490|... 32 6.7
emb|CAC08221.2| putative terminal protein / DNA-polymerase [Pich... 31 8.7
>ref|NP_200134.1| unknown protein; protein id: At5g53220.1 [Arabidopsis thaliana]
gi|9759169|dbj|BAB09784.1| gene_id:K19E1.2~unknown
protein [Arabidopsis thaliana]
Length = 441
Score = 92.4 bits (228), Expect = 3e-18
Identities = 42/79 (53%), Positives = 58/79 (73%)
Frame = -1
Query: 552 QMSKESMCHNNRGFSKCDAPRGSDLGEYLTEGDPSGGLKKSVEELQEYDPEAVEECRTLA 373
++ + S N RGFSK DA RG+ + +LT+GD +G +KKSVEEL+ +D + VE+C LA
Sbjct: 357 KVERSSHVSNGRGFSKVDAVRGTSIALFLTDGDSAGDMKKSVEELKVFDFKGVEKCEELA 416
Query: 372 TRYSKQLYEIYKNNEDPFF 316
+YSKQL++IY N EDPFF
Sbjct: 417 RKYSKQLFQIYNNREDPFF 435
>dbj|BAB59028.1| ABC transporter PMR5 [Penicillium digitatum]
Length = 1414
Score = 35.4 bits (80), Expect = 0.46
Identities = 23/58 (39%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Frame = -1
Query: 513 FSKCDAPRGSDLGEYLTEGDPSGGLKKSVEELQEYDPEAVEECRTLA-TRYSKQLYEI 343
F+K DAP G+ GEYL+E + G + ++ +PEA E CR TR S L+ I
Sbjct: 1321 FAKFDAPNGTTCGEYLSEFMQTIGARMNLT-----NPEATEGCRVCEYTRGSDYLFTI 1373
>ref|XP_235609.1| similar to hypothetical protein FLJ31937 [Homo sapiens] [Rattus
norvegicus]
Length = 1481
Score = 31.6 bits (70), Expect = 6.7
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Frame = -1
Query: 537 SMCHNNRGFSKCDAPRGS-DLGEYLTEGDP-------SGGLKKSVEELQEYDPEAVEECR 382
S+ H GF C S D GE T P +GG +K+VE Y E +
Sbjct: 220 SLTHLVPGFKTCQRQNCSQDQGEERTANRPRGAYVKIAGGTQKAVERDLLYSSEHADVMT 279
Query: 381 TLATRYSKQLYEIYKNNEDPFFP 313
LA RY + + + D FP
Sbjct: 280 LLAQRYDRIIRSLSLCQNDTIFP 302
>ref|NP_573313.2| CG6606-PA [Drosophila melanogaster] gi|7293490|gb|AAF48865.1|
CG6606-PA [Drosophila melanogaster]
Length = 832
Score = 31.6 bits (70), Expect = 6.7
Identities = 17/37 (45%), Positives = 21/37 (55%)
Frame = +2
Query: 383 LHSSTASGSYSCSSSTDFFKPPLGSPSVRYSPKSLPL 493
LHSS++S S S S D KPP +P P SLP+
Sbjct: 433 LHSSSSSSSSSSDSDDDDEKPPQAAPPPVPVPASLPV 469
>emb|CAC08221.2| putative terminal protein / DNA-polymerase [Pichia etchellsii]
Length = 1013
Score = 31.2 bits (69), Expect = 8.7
Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
Frame = -1
Query: 435 KSVEELQEYDPEAVEECRTLATRYSKQLYEIYKNNEDPFFP*LAASPAIGSVSSVKKW-- 262
KS EELQ E + E Y Y +Y NN +A + +I + S++ W
Sbjct: 170 KSKEELQNEIEENLIEVIKRVPSYEDNTYSLYNNN-------IAITVSISNWESIENWGD 222
Query: 261 NYVCTNLS 238
Y+C L+
Sbjct: 223 RYICNKLT 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,129,138
Number of Sequences: 1393205
Number of extensions: 9588108
Number of successful extensions: 25050
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25025
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
