Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005665A_C01 KMC005665A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB63775.1| P0004A09.11 [Oryza sativa (japonica cultivar-gro... 39 0.038
ref|NP_611603.2| CG30263-PA [Drosophila melanogaster] gi|2164530... 39 0.049
gb|AAM01059.1|AC091735_32 Hypothetical protein [Oryza sativa] 38 0.084
dbj|BAC57714.1| P0683C09.28 [Oryza sativa (japonica cultivar-gro... 38 0.11
ref|NP_036614.1| zinc finger protein 281; ZNP-99 transcription f... 37 0.19
>dbj|BAB63775.1| P0004A09.11 [Oryza sativa (japonica cultivar-group)]
Length = 229
Score = 39.3 bits (90), Expect = 0.038
Identities = 37/112 (33%), Positives = 45/112 (40%)
Frame = -3
Query: 370 RKLCGTALDFQNEARRSDGGRSSN*FRVLFPLFSHGFTRRRQRRRGDGGAASGKKERTHA 191
R+ CG A ARR DG R R+ +R RGDG AAS + R H
Sbjct: 29 RRRCGGA----RAARRDDGARRR---------------RKARRLRGDGAAASEVEARRHD 69
Query: 190 RGSSRAQGCPCWLFEKGRPGTRHRGGGDLRQRK*EERLWRLAMRRRERYGDG 35
G +R + GR G R G R+ K R A RR + GDG
Sbjct: 70 NGGARKG-------DGGRGGRREEGRRGRRRGK------RAATRRCDGDGDG 108
>ref|NP_611603.2| CG30263-PA [Drosophila melanogaster] gi|21645309|gb|AAF46751.2|
CG30263-PA [Drosophila melanogaster]
Length = 1831
Score = 38.9 bits (89), Expect = 0.049
Identities = 30/122 (24%), Positives = 59/122 (47%), Gaps = 12/122 (9%)
Frame = +2
Query: 173 STRGATSVGPFLLSRRSTTVASSP-------LSPASETMTEQRKQNPKLI*RSAAVTPAS 331
S+ ++S+ P ++R + A++P LSPAS M ++ +P + ++ V+
Sbjct: 960 SSLRSSSISPATMARNRSMRATTPSRRKSISLSPASAMMGRRKSISPDAVGQNRRVSSRG 1019
Query: 332 F-----VLKVKGSSAKLSTSSSRIPSQVIAKSCDGHQRKRKLRPEKKEEFNSAPQP*ELG 496
+L + S +++ T S+++ S KS +KR PEK + S P+ ++G
Sbjct: 1020 KPEPPEILSRRNSRSRIPTRSTKVAS----KSPPSSSKKRSKSPEKPKAMGSTPKSNKVG 1075
Query: 497 LG 502
G
Sbjct: 1076 KG 1077
>gb|AAM01059.1|AC091735_32 Hypothetical protein [Oryza sativa]
Length = 251
Score = 38.1 bits (87), Expect = 0.084
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Frame = -3
Query: 385 SGRGGRKLCGTALDFQNEARRSDGGRSSN*FRVLFPLFSHGFTRR-----RQRRRGDGGA 221
+G G ++ CG A A R G R+ L + G RR +R GDG +
Sbjct: 88 AGSGRQRNCGDATGGDVMAARGSGWRAG--------LGADGMARRGAGLGARRWDGDGNS 139
Query: 220 ASGKKERTHARGSSRAQGCPCWLFEKGRPGTRHRGGGDLRQRK*EERLWRLAMRRRERYG 41
+G + R +ARG +GR G + GG RQR+ + WRL R G
Sbjct: 140 GAGSRRRWNARGDGTGGD-----GARGRAG--RQDGGAARQRR-SDGAWRLGARGARGRG 191
Query: 40 DG 35
G
Sbjct: 192 HG 193
>dbj|BAC57714.1| P0683C09.28 [Oryza sativa (japonica cultivar-group)]
Length = 129
Score = 37.7 bits (86), Expect = 0.11
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = -3
Query: 265 GFTRRRQRRRGDGGAASGKKERTHARGSSRAQGC-----PCWLFEKGR-PGTRHRGGGDL 104
GF RRQ R D G +E+ G QG P W+ ++ + P TR
Sbjct: 44 GFGARRQAARVDPTMTVGNREQAAESGEQHRQGGWEWGHPTWIRQQRQVPATR-----SW 98
Query: 103 RQRK*EERLWRLAMRRRERYGDGGD 29
RQR R+W RRR R G GGD
Sbjct: 99 RQRLVPSRIWHR--RRRRRPGTGGD 121
>ref|NP_036614.1| zinc finger protein 281; ZNP-99 transcription factor [Homo sapiens]
gi|13124664|sp|Q9Y2X9|Z281_HUMAN Zinc finger protein 281
(Zinc finger DNA binding protein 99) (Transcription
factor ZBP-99) (GC-box-binding zinc finger protein 1)
gi|7513434|pir||JC7089 zinc finger binding protein-99 -
human gi|4455118|gb|AAD21084.1| zinc finger DNA binding
protein 99 [Homo sapiens] gi|6822172|emb|CAB70968.1|
zinc finger protein [Homo sapiens]
Length = 895
Score = 37.0 bits (84), Expect = 0.19
Identities = 36/126 (28%), Positives = 48/126 (37%), Gaps = 10/126 (7%)
Frame = +1
Query: 4 PLSNTKTEYHHHHHTFLFFSWPAATTVPLTSSVASHHHHGVWFLAFLSRTTSMG------ 165
P + + HHHHH HHH+G F R+ +G
Sbjct: 132 PADPEEQQSHHHHH---------------------HHHYGGLFAGAEERSPGLGGGEGGS 170
Query: 166 ---IPEHARSHERGSFPSFPTQHHRR-LFSSVSGE*NHD*TEETKP*TNLTIGRRHSGEL 333
I + + H+ P QHHR L SS S +H TEE K TN+ +R
Sbjct: 171 HGVIQDLSILHQH--VQQQPAQHHRDVLLSSSSRTDDHHGTEEPKQDTNVKKAKRP---- 224
Query: 334 RSESQG 351
+ ESQG
Sbjct: 225 KPESQG 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,032,170
Number of Sequences: 1393205
Number of extensions: 13371825
Number of successful extensions: 54503
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 46541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52045
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
