KMC005656A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005656A_C01 KMC005656A_c01
aagaacagaaatgGAATACATCTCTTTATTACTAACAGTCTGGTTACAAACACAACAGGG
TACAAACATGAAAATCCCCCAATAAATAGAAAACAATCATACAGGATTGTATATAATATT
ATATGCACAAATAAATTAGAAAGATCAACATTTCAAATCTCGCTTCCCAGTGTTGATTGG
ACCATCCCTTGAAAACCTTAAGATTAGGAAGTGCAAGATGGCCATCAATGAAATAAAATC
AACCTCGTCTGACTCAGAAATGGTGTAGCTCATAGATGAAACATTTTTATTAAATGAATA
TAGAAAGGAAGCTAGATGGTCCACTTCGCTCCAAATAGAACTTGGCTTTATTCCGGGATG
AAAACTGGAATCTGATTTATCACAAATGGGGCATCCGCATTTTAGGCTTAATTGTACACG
GGTGGTGGTGGTGAAGCATAAATGTAAACTGGTGGTGGAGGAGACTTTGTTGGTGGGGGA
GGTGATTTGTAAATGTATGGTGGAGGGGGAGATGGTGAAGG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005656A_C01 KMC005656A_c01
         (521 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C29356 hydroxyproline-rich glycoprotein (clone Hyp2.13) - k...    80  1e-14
emb|CAA07235.1| extensin [Cicer arietinum]                             79  2e-14
ref|NP_181844.1| putative extensin; protein id: At2g43150.1 [Ara...    74  8e-13
pir||A29356 hydroxyproline-rich glycoprotein (clone Hyp3.6) - ki...    74  1e-12
dbj|BAC23027.1| extensin [Solanum tuberosum]                           74  1e-12

>pir||C29356 hydroxyproline-rich glycoprotein (clone Hyp2.13) - kidney bean
           (fragment) gi|169349|gb|AAA33765.1| hydroxyproline-rich
           glycoprotein
          Length = 368

 Score = 80.1 bits (196), Expect = 1e-14
 Identities = 32/37 (86%), Positives = 32/37 (86%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPVYN 411
           PSPSPPPPY Y SPPPPTKSPPPP Y YASPPPP YN
Sbjct: 332 PSPSPPPPYYYVSPPPPTKSPPPPAYSYASPPPPTYN 368

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 166 PSPSPPPPYYYKSPPPPSPSPPPP-YYYKSPPPP 198

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 284 PSPSPPPPYYYKSPPPPSPSPPPPYY-YKSPPPP 316

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 214 PSPSPPPPYYYKSPPPPSPSPPPP-YYYKSPPPP 246

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 28/34 (82%), Positives = 28/34 (82%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP  SPPPP Y Y SPPPP
Sbjct: 252 PSPSPPPPYYYKSPPPPDPSPPPPYY-YKSPPPP 284

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 28/34 (82%), Positives = 28/34 (82%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP  SPPPP Y Y SPPPP
Sbjct: 182 PSPSPPPPYYYKSPPPPDPSPPPPYY-YKSPPPP 214

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 27/34 (79%), Positives = 28/34 (81%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           P PSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 268 PDPSPPPPYYYKSPPPPSPSPPPPYY-YKSPPPP 300

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 27/34 (79%), Positives = 28/34 (81%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           P PSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 198 PDPSPPPPYYYKSPPPPSPSPPPPYY-YKSPPPP 230

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 28/39 (71%), Positives = 29/39 (73%), Gaps = 5/39 (12%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSP-----PPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SP     PPP Y Y SPPPP
Sbjct: 230 PSPSPPPPYYYKSPPPPSPSPPPSPSPPPPYYYKSPPPP 268

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 26/34 (76%), Positives = 27/34 (78%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSP PP PY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 316 PSPDPPTPYYYKSPPPPSPSPPPPYY-YVSPPPP 348

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 26/34 (76%), Positives = 27/34 (78%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+  PP P Y Y SPPPP
Sbjct: 300 PSPSPPPPYYYKSPPPPSPDPPTPYY-YKSPPPP 332

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 26/39 (66%), Positives = 27/39 (68%), Gaps = 6/39 (15%)
 Frame = -1

Query: 518 SPSPP------PPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           SP PP      PPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 145 SPPPPHKDPYYPPYYYKSPPPPSPSPPPP-YYYKSPPPP 182

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -1

Query: 521 PSPSPPP-PYIYKSPPPPTKSPPPPVYIYASPPPP 420
           P PSP P PY YKSPPPP K P  P Y Y SPPPP
Sbjct: 132 PPPSPSPSPYYYKSPPPPHKDPYYPPYYYKSPPPP 166

 Score = 52.0 bits (123), Expect = 4e-06
 Identities = 24/36 (66%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = -1

Query: 512 SPPPPYIYKSPPPPTKSPPPP-----VYIYASPPPP 420
           SPPPPY YKSPP   KSPPPP      Y Y SPPPP
Sbjct: 114 SPPPPYYYKSPPYYYKSPPPPSPSPSPYYYKSPPPP 149

>emb|CAA07235.1| extensin [Cicer arietinum]
          Length = 192

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 32/36 (88%), Positives = 33/36 (90%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPVY 414
           PSPSP P YIYKSPPPP KSPPPPVYIYASPPPP+Y
Sbjct: 156 PSPSPAPTYIYKSPPPPVKSPPPPVYIYASPPPPIY 191

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 60  PSPSPPPPYYYKSPPPPSPSPPPP-YYYKSPPPP 92

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 12  PSPSPPPPYYYKSPPPPSPSPPPP-YYYKSPPPP 44

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 28  PSPSPPPPYYYKSPPPPSPSPPPPYY-YHSPPPP 60

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 76  PSPSPPPPYYYKSPPPPSPSPPPP-YHYQSPPPP 108

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 27/34 (79%), Positives = 28/34 (81%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY Y SPPPP+ SPPPP Y Y SPPPP
Sbjct: 44  PSPSPPPPYYYHSPPPPSPSPPPPYY-YKSPPPP 76

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 26/35 (74%), Positives = 28/35 (79%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           PSP+P  PY YKSPPPPT SPPPP Y Y SPPPP+
Sbjct: 108 PSPTPRTPYYYKSPPPPTSSPPPP-YHYVSPPPPI 141

 Score = 61.2 bits (147), Expect = 7e-09
 Identities = 26/34 (76%), Positives = 27/34 (78%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           P+ SPPPPY Y SPPPP KSPPPP Y Y SPPPP
Sbjct: 124 PTSSPPPPYHYVSPPPPIKSPPPP-YHYTSPPPP 156

 Score = 54.3 bits (129), Expect = 8e-07
 Identities = 22/29 (75%), Positives = 23/29 (78%)
 Frame = -1

Query: 506 PPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PPPY Y SPPPP+ SPPPP Y Y SPPPP
Sbjct: 1   PPPYYYHSPPPPSPSPPPP-YYYKSPPPP 28

>ref|NP_181844.1| putative extensin; protein id: At2g43150.1 [Arabidopsis thaliana]
           gi|25307798|pir||F84862 probable extensin [imported] -
           Arabidopsis thaliana gi|3763924|gb|AAC64304.1| putative
           extensin [Arabidopsis thaliana]
          Length = 212

 Score = 74.3 bits (181), Expect = 8e-13
 Identities = 29/36 (80%), Positives = 31/36 (85%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPVY 414
           P  SPPPPY+Y SPPPP KSPPPPVYIYASPPPP +
Sbjct: 176 PVKSPPPPYLYSSPPPPVKSPPPPVYIYASPPPPTH 211

 Score = 65.9 bits (159), Expect = 3e-10
 Identities = 27/35 (77%), Positives = 29/35 (82%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY Y SPPPP KSPPPP Y+Y+SPPPPV
Sbjct: 64  PVKSPPPPYYYHSPPPPVKSPPPP-YVYSSPPPPV 97

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 27/35 (77%), Positives = 29/35 (82%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY Y SPPPP KSPPPP Y+Y+SPPPPV
Sbjct: 160 PVKSPPPPYYYHSPPPPVKSPPPP-YLYSSPPPPV 193

 Score = 65.1 bits (157), Expect = 5e-10
 Identities = 27/35 (77%), Positives = 28/35 (79%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY+Y SPPPP KSPPPP Y Y SPPPPV
Sbjct: 80  PVKSPPPPYVYSSPPPPVKSPPPPYY-YHSPPPPV 113

 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 28/35 (80%), Positives = 28/35 (80%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY YKSPPPP KSPPPP Y Y SPPPPV
Sbjct: 48  PVKSPPPPYEYKSPPPPVKSPPPP-YYYHSPPPPV 81

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 27/35 (77%), Positives = 27/35 (77%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY Y SPPPP KSPPPP Y Y SPPPPV
Sbjct: 144 PVKSPPPPYYYHSPPPPVKSPPPPYY-YHSPPPPV 177

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 27/35 (77%), Positives = 27/35 (77%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY Y SPPPP KSPPPP Y Y SPPPPV
Sbjct: 128 PVKSPPPPYYYHSPPPPVKSPPPP-YYYHSPPPPV 161

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 27/35 (77%), Positives = 27/35 (77%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY Y SPPPP KSPPPP Y Y SPPPPV
Sbjct: 112 PVKSPPPPYYYHSPPPPVKSPPPP-YYYHSPPPPV 145

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 27/35 (77%), Positives = 27/35 (77%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           P  SPPPPY Y SPPPP KSPPPP Y Y SPPPPV
Sbjct: 96  PVKSPPPPYYYHSPPPPVKSPPPPYY-YHSPPPPV 129

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 27/32 (84%)
 Frame = -1

Query: 512 SPPPPYIYKSPPPPTKSPPPPVYIYASPPPPV 417
           SPPPPY YKSPPPP KSPPPP Y Y SPPPPV
Sbjct: 35  SPPPPYEYKSPPPPVKSPPPP-YEYKSPPPPV 65

>pir||A29356 hydroxyproline-rich glycoprotein (clone Hyp3.6) - kidney bean
           (fragment)
          Length = 163

 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 31/45 (68%), Positives = 34/45 (74%), Gaps = 9/45 (20%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPT---------KSPPPPVYIYASPPPPVY 414
           PSPSPPPPY YKSPPPP+         KSPPPP YIY+SPPPP+Y
Sbjct: 118 PSPSPPPPYYYKSPPPPSPAPAPKYIYKSPPPPAYIYSSPPPPIY 162

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 22  PSPSPPPPYYYKSPPPPSPSPPPP-YYYKSPPPP 54

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 38  PSPSPPPPYYYKSPPPPSPSPPPPYY-YKSPPPP 70

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 54  PSPSPPPPYYYKSPPPPSPSPPPP-YYYHSPPPP 86

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 26/34 (76%), Positives = 27/34 (78%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSP+P PPY YKSPPPPT  PPPP Y Y SPPPP
Sbjct: 86  PSPTPHPPYYYKSPPPPTSYPPPP-YHYVSPPPP 118

 Score = 60.8 bits (146), Expect = 9e-09
 Identities = 25/34 (73%), Positives = 27/34 (78%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY Y SPPPP+ +P PP Y Y SPPPP
Sbjct: 70  PSPSPPPPYYYHSPPPPSPTPHPP-YYYKSPPPP 102

 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 25/34 (73%), Positives = 26/34 (75%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSP   PPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 6   PSPVVKPPYYYKSPPPPSPSPPPP-YYYKSPPPP 38

 Score = 57.8 bits (138), Expect = 8e-08
 Identities = 24/34 (70%), Positives = 26/34 (75%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           P+  PPPPY Y SPPPP+ SPPPP Y Y SPPPP
Sbjct: 102 PTSYPPPPYHYVSPPPPSPSPPPP-YYYKSPPPP 134

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = -1

Query: 509 PPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PPPP     PP P   PP   Y Y SPPPP
Sbjct: 1   PPPP-----PPSPVVKPP---YYYKSPPPP 22

>dbj|BAC23027.1| extensin [Solanum tuberosum]
          Length = 152

 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 32/39 (82%), Positives = 32/39 (82%), Gaps = 3/39 (7%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPT---KSPPPPVYIYASPPPPVY 414
           PSPSPPPPY YKSPPPP    KSPPPPVY Y SPPPPVY
Sbjct: 55  PSPSPPPPYYYKSPPPPPPVYKSPPPPVYKYKSPPPPVY 93

 Score = 70.1 bits (170), Expect = 1e-11
 Identities = 30/45 (66%), Positives = 32/45 (70%), Gaps = 9/45 (20%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVY---------IYASPPPPVY 414
           PSPSPPPPY YKSPPPP+ SPPPP Y         +Y SPPPPVY
Sbjct: 39  PSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPPPVYKSPPPPVY 83

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 28/34 (82%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPSPPPPY YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 23  PSPSPPPPYYYKSPPPPSPSPPPP-YYYKSPPPP 55

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 27/34 (79%), Positives = 29/34 (84%)
 Frame = -1

Query: 521 PSPSPPPPYIYKSPPPPTKSPPPPVYIYASPPPP 420
           PSPS PPPY+YKSPPPP+ SPPPP Y Y SPPPP
Sbjct: 7   PSPSLPPPYVYKSPPPPSPSPPPP-YYYKSPPPP 39

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 32/55 (58%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
 Frame = -1

Query: 518 SPSPPPP-YIYKSPPPPT---KSPPPPVYIYASPPPPVYN*A*NADAPFVINQIP 366
           SP PPPP Y YKSPPPP    KSPPPPVY Y SPPPPV+     + AP+     P
Sbjct: 97  SPPPPPPVYKYKSPPPPVYKYKSPPPPVYKYKSPPPPVH----KSPAPYYYTSPP 147

 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 25/39 (64%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
 Frame = -1

Query: 512 SPPPPYI--YKSPPPPT----KSPPPPVYIYASPPPPVY 414
           SPPPP       PPPP     KSPPPPVY Y SPPPPVY
Sbjct: 87  SPPPPVYKYKSPPPPPPVYKYKSPPPPVYKYKSPPPPVY 125

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 22/32 (68%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 512 SPPPP-YIYKSPPPPTKSPPPPVYIYASPPPP 420
           SPPPP Y YKSPPPP    P P Y Y SPPPP
Sbjct: 119 SPPPPVYKYKSPPPPVHKSPAP-YYYTSPPPP 149

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 491 YKSPPPPTKSPPPPVYIYASPPPP 420
           YKSPPPP+ S PPP Y+Y SPPPP
Sbjct: 1   YKSPPPPSPSLPPP-YVYKSPPPP 23

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,089,820
Number of Sequences: 1393205
Number of extensions: 13046951
Number of successful extensions: 190124
Number of sequences better than 10.0: 2304
Number of HSP's better than 10.0 without gapping: 56647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131803
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD066d11_f BP049269 1 521
2 MPDL071a07_f AV780117 7 226
3 MWL015e02_f AV768835 14 499




Lotus japonicus
Kazusa DNA Research Institute