Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005649A_C01 KMC005649A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P15001|PHYA_PEA Phytochrome A gi|81937|pir||S06856 phytochrom... 210 1e-53
sp|P93673|PHYA_LATSA Phytochrome type A gi|1848273|gb|AAB47994.1... 209 2e-53
sp|P42500|PHYA_SOYBN Phytochrome A gi|7430893|pir||T07137 phytoc... 207 1e-52
pir||FKMUA phytochrome A - Arabidopsis thaliana gi|16421|emb|CAA... 170 2e-41
ref|NP_172428.1| putative phytochrome A; protein id: At1g09570.1... 170 2e-41
>sp|P15001|PHYA_PEA Phytochrome A gi|81937|pir||S06856 phytochrome - garden pea
gi|169132|gb|AAA33682.1| phytochrome
gi|295830|emb|CAA32242.1| phytochrome apoprotein [Pisum
sativum] gi|226757|prf||1604466A phytochrome
Length = 1124
Score = 210 bits (535), Expect = 1e-53
Identities = 110/120 (91%), Positives = 115/120 (95%)
Frame = -2
Query: 628 LYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKEQLGKSVHLANLELSITHGGSGV 449
LYGDSLRLQQVLADFLLISIN TPNGGQVV+AASLTKEQLGKSVHL NLELSITHGGSGV
Sbjct: 1004 LYGDSLRLQQVLADFLLISINSTPNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGSGV 1063
Query: 448 PEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGQSSFILSVELAAAHKLK 269
PEA LNQMFGN+ LESEEGISL ISRKLLKLM+GDVRYL+EAG+SSFILSVELAAAHKLK
Sbjct: 1064 PEAALNQMFGNNVLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHKLK 1123
>sp|P93673|PHYA_LATSA Phytochrome type A gi|1848273|gb|AAB47994.1| phytochrome type A
[Lathyrus sativus]
Length = 1124
Score = 209 bits (532), Expect = 2e-53
Identities = 109/120 (90%), Positives = 115/120 (95%)
Frame = -2
Query: 628 LYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKEQLGKSVHLANLELSITHGGSGV 449
LYGDSLRLQQVLADFLLISIN TPNGGQVV+A+SLTKEQLGKSVHL NLELSITHGGSGV
Sbjct: 1004 LYGDSLRLQQVLADFLLISINSTPNGGQVVIASSLTKEQLGKSVHLVNLELSITHGGSGV 1063
Query: 448 PEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGQSSFILSVELAAAHKLK 269
PEA LNQMFGN+ LESEEGISL ISRKLLKLM+GDVRYL+EAG+SSFILSVELAAAHKLK
Sbjct: 1064 PEAALNQMFGNNVLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHKLK 1123
>sp|P42500|PHYA_SOYBN Phytochrome A gi|7430893|pir||T07137 phytochrome A - soybean
gi|515749|gb|AAA33957.1| phytochrome A
gi|515751|gb|AAA33999.1| phytochrome A
Length = 1131
Score = 207 bits (526), Expect = 1e-52
Identities = 108/121 (89%), Positives = 112/121 (92%)
Frame = -2
Query: 628 LYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKEQLGKSVHLANLELSITHGGSGV 449
LYGDSLRLQQVLADFLLISIN TPNGGQVVVA SLTKEQLGKSVHL LELSITHGGSGV
Sbjct: 1011 LYGDSLRLQQVLADFLLISINFTPNGGQVVVAGSLTKEQLGKSVHLVKLELSITHGGSGV 1070
Query: 448 PEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGQSSFILSVELAAAHKLK 269
PE LLNQMFGN+GLESEEGISLLI KLLKLM+GDVRYLREAG+S+FILS ELAAAH LK
Sbjct: 1071 PEVLLNQMFGNNGLESEEGISLLIRAKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLK 1130
Query: 268 A 266
A
Sbjct: 1131 A 1131
>pir||FKMUA phytochrome A - Arabidopsis thaliana gi|16421|emb|CAA35221.1| phyA
photoreceptor [Arabidopsis thaliana]
Length = 1122
Score = 170 bits (430), Expect = 2e-41
Identities = 81/118 (68%), Positives = 107/118 (90%)
Frame = -2
Query: 628 LYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKEQLGKSVHLANLELSITHGGSGV 449
LYGDS+RLQQVLADF+L+++N TP+GGQ+ V+ASL K+QLG+SVHLANLE+ +TH G+G+
Sbjct: 1005 LYGDSIRLQQVLADFMLMAVNFTPSGGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGI 1064
Query: 448 PEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGQSSFILSVELAAAHK 275
PE LLNQMFG + SEEG+SL++SRKL+KLM+GDV+YLR+AG+SSFI++ ELAAA+K
Sbjct: 1065 PEFLLNQMFGTEEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAANK 1122
>ref|NP_172428.1| putative phytochrome A; protein id: At1g09570.1, supported by cDNA:
gi_14517371 [Arabidopsis thaliana]
gi|6093714|sp|P14712|PHYA_ARATH Phytochrome A
gi|25282816|pir||D86229 phytochrome A [imported] -
Arabidopsis thaliana gi|404670|gb|AAA21351.1| phytochrome
A gi|3482934|gb|AAC33219.1| phytochrome A [Arabidopsis
thaliana] gi|14517372|gb|AAK62577.1| At1g09570/F14J9_27
[Arabidopsis thaliana]
Length = 1122
Score = 170 bits (430), Expect = 2e-41
Identities = 81/118 (68%), Positives = 107/118 (90%)
Frame = -2
Query: 628 LYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKEQLGKSVHLANLELSITHGGSGV 449
LYGDS+RLQQVLADF+L+++N TP+GGQ+ V+ASL K+QLG+SVHLANLE+ +TH G+G+
Sbjct: 1005 LYGDSIRLQQVLADFMLMAVNFTPSGGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGI 1064
Query: 448 PEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGQSSFILSVELAAAHK 275
PE LLNQMFG + SEEG+SL++SRKL+KLM+GDV+YLR+AG+SSFI++ ELAAA+K
Sbjct: 1065 PEFLLNQMFGTEEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAANK 1122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,317,467
Number of Sequences: 1393205
Number of extensions: 9684602
Number of successful extensions: 23068
Number of sequences better than 10.0: 454
Number of HSP's better than 10.0 without gapping: 22421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22972
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
