Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005644A_C01 KMC005644A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10497.1| nuclear pore protein-like [Arabidopsis thaliana] 86 3e-16
ref|NP_198864.1| nuclear pore protein -like; protein id: At5g404... 86 3e-16
ref|NP_005798.1| proteoglycan 4; megakaryocyte stimulating facto... 36 0.41
emb|CAC36090.1| bG174L6.2 (MSF: megakaryocyte stimulating factor... 36 0.41
gb|EAA10904.1| ebiP6868 [Anopheles gambiae str. PEST] 35 0.90
>dbj|BAB10497.1| nuclear pore protein-like [Arabidopsis thaliana]
Length = 1962
Score = 86.3 bits (212), Expect = 3e-16
Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = -1
Query: 584 LLLIFSIAIFLRFLDRPDRSQQTSAPVTASIGAPTTPERSSPGVP-NEMSPRTPQPFVDY 408
L+L+ S+ I ++ +DR + T + A TPER S V +E SPRTP PF++Y
Sbjct: 1878 LVLVVSVIILMKVIDRQVPTGATGTATYSGNAAQGTPERRSGTVIYHEESPRTPSPFMEY 1937
Query: 407 VRRTIDETPYYKREGRRRVNPQNT 336
V+RT+DETPYY+REGRRR NPQNT
Sbjct: 1938 VKRTVDETPYYRREGRRRFNPQNT 1961
>ref|NP_198864.1| nuclear pore protein -like; protein id: At5g40480.1 [Arabidopsis
thaliana]
Length = 1919
Score = 86.3 bits (212), Expect = 3e-16
Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = -1
Query: 584 LLLIFSIAIFLRFLDRPDRSQQTSAPVTASIGAPTTPERSSPGVP-NEMSPRTPQPFVDY 408
L+L+ S+ I ++ +DR + T + A TPER S V +E SPRTP PF++Y
Sbjct: 1835 LVLVVSVIILMKVIDRQVPTGATGTATYSGNAAQGTPERRSGTVIYHEESPRTPSPFMEY 1894
Query: 407 VRRTIDETPYYKREGRRRVNPQNT 336
V+RT+DETPYY+REGRRR NPQNT
Sbjct: 1895 VKRTVDETPYYRREGRRRFNPQNT 1918
>ref|NP_005798.1| proteoglycan 4; megakaryocyte stimulating factor; proteoglycan 4,
(megakaryocyte stimulating factor, articular superficial
zone protein); Jacobs
camptodactyly-arthropathy-pericarditis syndrome;
camptodactyly, arthropathy, coxa vara, pericarditis
syndrome [Homo sapiens] gi|1572721|gb|AAB09089.1|
megakaryocyte stimulating factor; MSF [Homo sapiens]
Length = 1404
Score = 35.8 bits (81), Expect = 0.41
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 536 PDRSQQTSAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P + SAP T APTTP++ +P P E +P TP+
Sbjct: 420 PAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPK 457
Score = 35.0 bits (79), Expect = 0.69
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 509 PVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P T APTTPE+ +P P E++P TP+
Sbjct: 626 PTTPEKLAPTTPEKPAPTTPEELAPTTPE 654
Score = 34.7 bits (78), Expect = 0.90
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTPE +P P E +P TP+
Sbjct: 633 APTTPEKPAPTTPEELAPTTPEEPTPTTPE 662
Score = 33.9 bits (76), Expect = 1.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP++ +P P +++P TP+
Sbjct: 609 APTTPKETAPTTPKKLTPTTPEKLAPTTPE 638
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTPE +P P E +P TP+
Sbjct: 641 APTTPEELAPTTPEEPTPTTPEEPAPTTPK 670
Score = 33.9 bits (76), Expect = 1.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQPFVDYVRRTIDETP 381
AP T APTTP+ +P P E +P TP+ + TP
Sbjct: 436 APTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP 479
Score = 33.9 bits (76), Expect = 1.5
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP++ +P P E +P TP+
Sbjct: 561 APTTPKEPAPTTPKKPAPTTPKEPAPTTPK 590
Score = 33.9 bits (76), Expect = 1.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTP-QPFVDYVRRTIDETP 381
AP T AP TP+ +P P E +P TP +P + T TP
Sbjct: 665 APTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTP 709
Score = 33.5 bits (75), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P P E +P TP+
Sbjct: 681 APTTPKEPAPTTPKEPAPTTPKETAPTTPK 710
Score = 32.7 bits (73), Expect = 3.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 521 QTSAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
+ +AP T APTTP+ +P P E +P TP+
Sbjct: 670 KAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPK 702
Score = 32.7 bits (73), Expect = 3.4
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = -1
Query: 509 PVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P T APTTP+ ++P P E +P TP+
Sbjct: 658 PTTPEEPAPTTPKAAAPNTPKEPAPTTPK 686
Score = 32.7 bits (73), Expect = 3.4
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -1
Query: 536 PDRSQQTSAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P + + AP T APT P++ +P P E +P TP+
Sbjct: 467 PAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPK 504
Score = 32.7 bits (73), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P P E +P TP+
Sbjct: 750 APTTPKGTAPTTPKEPAPTTPKEPAPTTPK 779
Score = 32.3 bits (72), Expect = 4.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP APTTP+ ++P P +++P TP+
Sbjct: 601 APTAPKEPAPTTPKETAPTTPKKLTPTTPE 630
Score = 32.0 bits (71), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P P + +P TP+
Sbjct: 819 APTTPKETAPTTPKEPAPTTPKKPAPTTPE 848
Score = 32.0 bits (71), Expect = 5.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APT P+ +P P E +P TP+
Sbjct: 593 APTTTKKPAPTAPKEPAPTTPKETAPTTPK 622
Score = 32.0 bits (71), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = -1
Query: 515 SAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
+AP T PTTPE+ +P P + +P TP+
Sbjct: 616 TAPTTPKKLTPTTPEKLAPTTPEKPAPTTPE 646
Score = 31.6 bits (70), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T PTTPE +P P +P TP+
Sbjct: 649 APTTPEEPTPTTPEEPAPTTPKAAAPNTPK 678
Score = 31.2 bits (69), Expect = 10.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P E SP TP+
Sbjct: 491 APTTPKEPAPTTPKEPAPTTTKEPSPTTPK 520
>emb|CAC36090.1| bG174L6.2 (MSF: megakaryocyte stimulating factor ) [Homo sapiens]
Length = 1404
Score = 35.8 bits (81), Expect = 0.41
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 536 PDRSQQTSAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P + SAP T APTTP++ +P P E +P TP+
Sbjct: 420 PAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPK 457
Score = 35.0 bits (79), Expect = 0.69
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 509 PVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P T APTTPE+ +P P E++P TP+
Sbjct: 626 PTTPEKLAPTTPEKPAPTTPEELAPTTPE 654
Score = 34.7 bits (78), Expect = 0.90
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTPE +P P E +P TP+
Sbjct: 633 APTTPEKPAPTTPEELAPTTPEEPTPTTPE 662
Score = 34.3 bits (77), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ ++P P +++P TP+
Sbjct: 601 APTTPKEPAPTTPKETAPTTPKKLTPTTPE 630
Score = 34.3 bits (77), Expect = 1.2
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTP-QPFVDYVRRTIDETP 381
AP T APTTP++ +P P E +P TP +P ++ TP
Sbjct: 561 APTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTP 605
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTPE +P P E +P TP+
Sbjct: 641 APTTPEELAPTTPEEPTPTTPEEPAPTTPK 670
Score = 33.9 bits (76), Expect = 1.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQPFVDYVRRTIDETP 381
AP T APTTP+ +P P E +P TP+ + TP
Sbjct: 436 APTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP 479
Score = 33.9 bits (76), Expect = 1.5
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P P E +P TP+
Sbjct: 593 APTTTKKPAPTTPKEPAPTTPKETAPTTPK 622
Score = 33.9 bits (76), Expect = 1.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP++ +P P +++P TP+
Sbjct: 609 APTTPKETAPTTPKKLTPTTPEKLAPTTPE 638
Score = 33.9 bits (76), Expect = 1.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTP-QPFVDYVRRTIDETP 381
AP T AP TP+ +P P E +P TP +P + T TP
Sbjct: 665 APTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTP 709
Score = 33.5 bits (75), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P P E +P TP+
Sbjct: 681 APTTPKEPAPTTPKEPAPTTPKETAPTTPK 710
Score = 32.7 bits (73), Expect = 3.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 521 QTSAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
+ +AP T APTTP+ +P P E +P TP+
Sbjct: 670 KAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPK 702
Score = 32.7 bits (73), Expect = 3.4
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = -1
Query: 509 PVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P T APTTP+ ++P P E +P TP+
Sbjct: 658 PTTPEEPAPTTPKAAAPNTPKEPAPTTPK 686
Score = 32.7 bits (73), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P P E +P TP+
Sbjct: 750 APTTPKGTAPTTPKEPAPTTPKEPAPTTPK 779
Score = 32.7 bits (73), Expect = 3.4
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -1
Query: 536 PDRSQQTSAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
P + + AP T APT P++ +P P E +P TP+
Sbjct: 467 PAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPK 504
Score = 32.0 bits (71), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P P + +P TP+
Sbjct: 819 APTTPKETAPTTPKEPAPTTPKKPAPTTPE 848
Score = 32.0 bits (71), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = -1
Query: 515 SAPVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
+AP T PTTPE+ +P P + +P TP+
Sbjct: 616 TAPTTPKKLTPTTPEKLAPTTPEKPAPTTPE 646
Score = 31.6 bits (70), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T PTTPE +P P +P TP+
Sbjct: 649 APTTPEEPTPTTPEEPAPTTPKAAAPNTPK 678
Score = 31.2 bits (69), Expect = 10.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 512 APVTASIGAPTTPERSSPGVPNEMSPRTPQ 423
AP T APTTP+ +P E SP TP+
Sbjct: 491 APTTPKEPAPTTPKEPAPTTTKEPSPTTPK 520
>gb|EAA10904.1| ebiP6868 [Anopheles gambiae str. PEST]
Length = 634
Score = 34.7 bits (78), Expect = 0.90
Identities = 24/70 (34%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
Frame = -1
Query: 509 PVTASIGAPTT-PERSSPGVPNEMSPRTPQPFVDYVRRTIDETPYYKREGRRRVNPQNTF 333
P T++ APTT P R P + + R PQ Y +E Y +R RR+ P+N
Sbjct: 122 PTTSTTAAPTTVPSRPKP-LRKPVRRRRPQVDYYYYDEDYEEDYYEERNRRRKNRPRNR- 179
Query: 332 *TPIYDTVSE 303
P+YD E
Sbjct: 180 -RPLYDDYEE 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,233,732
Number of Sequences: 1393205
Number of extensions: 10996307
Number of successful extensions: 35918
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35657
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
