Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005643A_C01 KMC005643A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701038.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.2
ref|XP_145160.1| similar to Collagen alpha 1(VI) chain precursor... 32 4.2
gb|AAM74472.1| SMAD4 [Mus musculus] 32 4.2
>ref|NP_701038.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496101|gb|AAN35762.1|AE014838_40 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1739
Score = 32.3 bits (72), Expect = 3.2
Identities = 17/52 (32%), Positives = 32/52 (60%)
Frame = +2
Query: 77 LLFKGEVKAPVKLVNHISQDKNGFNTVHRNLKERKKVSRLKSIVLCILQRNN 232
+LF + K V ++HI +D N FN + K++KK+++ + I+ ++RNN
Sbjct: 62 ILFHNKNKQ-VHSISHIERDINFFNYENVETKKKKKINKSEEIIQNNIRRNN 112
>ref|XP_145160.1| similar to Collagen alpha 1(VI) chain precursor [Mus musculus]
Length = 775
Score = 32.0 bits (71), Expect = 4.2
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +1
Query: 253 PGVAGPRWMA*KPANRLLRAVWDTGLKG 336
PGVAGPR + P LR V DTG KG
Sbjct: 302 PGVAGPRGLPGPPGPMGLRGVGDTGAKG 329
>gb|AAM74472.1| SMAD4 [Mus musculus]
Length = 545
Score = 32.0 bits (71), Expect = 4.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 396 NPFGCQPNSTYWSLFSAHISSLKPRIPHGS*KPIGRFSCHPPRPGHSGDCY-IHQRL 229
N F QP++T W+ + + P +PH G HPP P H G + +H L
Sbjct: 250 NGFTAQPSTTTWT--GSRTAPYTPNLPHHQ---NGHLQHHPPMPPHPGHYWPVHNEL 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,171,955
Number of Sequences: 1393205
Number of extensions: 10125193
Number of successful extensions: 22759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22754
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
