Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005641A_C01 KMC005641A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_510225.2| Monocarboxylate transporter like [Caenorhabditi... 36 0.45
pir||T20080 hypothetical protein C49F8.2 - Caenorhabditis elegans 36 0.45
ref|NP_757570.1| conserved hypothetical protein [Mycoplasma pene... 34 1.7
ref|NP_405109.1| conserved hypothetical protein [Yersinia pestis... 33 2.2
ref|NP_702456.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.0
>ref|NP_510225.2| Monocarboxylate transporter like [Caenorhabditis elegans]
gi|22265799|emb|CAA94126.2| Hypothetical protein C49F8.2
[Caenorhabditis elegans]
Length = 771
Score = 35.8 bits (81), Expect = 0.45
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 261 FHLNLSIKNSSNMS-------TPNSFAVSP*ALKGASSKSATNLISSG*IPNTPLLIFRS 419
F S+ NS+ M+ T N F A S+ ATNLI+ G IP+ P+L+ R
Sbjct: 456 FRATSSVPNSARMNRNSVAAGTSNMFGGRVIASNAIQSRHATNLIAMGKIPSAPMLVARK 515
Query: 420 N 422
N
Sbjct: 516 N 516
>pir||T20080 hypothetical protein C49F8.2 - Caenorhabditis elegans
Length = 807
Score = 35.8 bits (81), Expect = 0.45
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 261 FHLNLSIKNSSNMS-------TPNSFAVSP*ALKGASSKSATNLISSG*IPNTPLLIFRS 419
F S+ NS+ M+ T N F A S+ ATNLI+ G IP+ P+L+ R
Sbjct: 492 FRATSSVPNSARMNRNSVAAGTSNMFGGRVIASNAIQSRHATNLIAMGKIPSAPMLVARK 551
Query: 420 N 422
N
Sbjct: 552 N 552
>ref|NP_757570.1| conserved hypothetical protein [Mycoplasma penetrans]
gi|26453642|dbj|BAC43974.1| conserved hypothetical
protein [Mycoplasma penetrans]
Length = 597
Score = 33.9 bits (76), Expect = 1.7
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Frame = -1
Query: 316 KEFGVLILLEFLMLRFKWNF*RSNRVSQCY--SMV**NYMLYMTFCGL*LYIK----LFN 155
K+ L+ + FL+ F +N ++N S + ++ ++ + F G+ +++K L
Sbjct: 195 KDIISLLFVSFLLGFFIFNVDKTNLASNSFYEKLLTDSFAFLIFFYGINVFLKKDINLER 254
Query: 154 FPFFSLDFIAIYLLAFRANHEVLIELFAYNFPLLFLC-KSLN 32
P+F + +A LL F + ++I +F Y ++F+C K +N
Sbjct: 255 EPYFFILSMASLLLVFINANYIIISIFIYALTIIFICLKKIN 296
>ref|NP_405109.1| conserved hypothetical protein [Yersinia pestis]
gi|22126526|ref|NP_669949.1| putative ATPase [Yersinia
pestis KIM] gi|25309608|pir||AG0185 conserved
hypothetical protein YPO1523 [imported] - Yersinia
pestis (strain CO92) gi|15979565|emb|CAC90346.1|
conserved hypothetical protein [Yersinia pestis CO92]
gi|21959526|gb|AAM86200.1|AE013867_3 putative ATPase
[Yersinia pestis KIM]
Length = 370
Score = 33.5 bits (75), Expect = 2.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 529 IHSSILSLAKDASCIFHYCGPCGHLHFLSGASRASILLLKINKGVLGIYPELIKFVADLD 350
+H +L + ++ S H C CGHL + G A L K + +LG P I DLD
Sbjct: 268 VHVPVLGIVENMS--MHVCSNCGHLEPIFGTGGAEKLAEKYHCKLLGQIPLHISLREDLD 325
>ref|NP_702456.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497640|gb|AAN37180.1|AE014825_39 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 340
Score = 32.3 bits (72), Expect = 5.0
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = -1
Query: 229 YSMV**NYMLYMTFCGL*LYI-KLFNFPFFSLDFIAIYLLAFRANHEVLIELFAYNFPLL 53
YS++ ++ ++ FCG Y+ +L++ F++ +I + +N E L E+F N P L
Sbjct: 51 YSLLIGLFITFLIFCGFFRYMTELYHTHFYNFKYIDV------SNTEKLKEIFFSNNPYL 104
Query: 52 FLCKSLNRNT 23
CK+ ++NT
Sbjct: 105 VYCKN-DKNT 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,920,345
Number of Sequences: 1393205
Number of extensions: 10538083
Number of successful extensions: 24541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24534
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
