Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005640A_C01 KMC005640A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD34458.1| Skp1 [Medicago sativa] 211 5e-54
gb|AAC63273.1| SKP1-like protein [Nicotiana clevelandii] 197 1e-49
dbj|BAB85607.1| kinetochore protein [Brassica juncea] 196 2e-49
ref|NP_565123.1| E3 ubiquitin ligase SCF complex subunit, SKP1/A... 194 5e-49
dbj|BAB85608.1| kinetochore protein [Brassica juncea] 193 1e-48
>gb|AAD34458.1| Skp1 [Medicago sativa]
Length = 153
Score = 211 bits (537), Expect = 5e-54
Identities = 101/113 (89%), Positives = 110/113 (96%)
Frame = -1
Query: 565 IPLPNVTSKILARVIEYCKKHVEASSSGEKPTEEELKQWDAEFVKVDQATLFDLILAANY 386
IPLPNVTSKILA+VIEYCKKHV+A+++ +KP E+ELK WD+EFVKVDQATLFDLILAANY
Sbjct: 41 IPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANY 100
Query: 385 LNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 227
LNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+PEEEEEVRRENQWAFE
Sbjct: 101 LNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE 153
>gb|AAC63273.1| SKP1-like protein [Nicotiana clevelandii]
Length = 153
Score = 197 bits (500), Expect = 1e-49
Identities = 98/114 (85%), Positives = 107/114 (92%), Gaps = 1/114 (0%)
Frame = -1
Query: 565 IPLPNVTSKILARVIEYCKKHVEASSSGE-KPTEEELKQWDAEFVKVDQATLFDLILAAN 389
IPLPNVTSKILA+VIEYCK+HV+A+S E K E++LK +DA+FVKVDQ+TLFDLILAAN
Sbjct: 40 IPLPNVTSKILAKVIEYCKRHVDAASKTEDKAVEDDLKAFDADFVKVDQSTLFDLILAAN 99
Query: 388 YLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 227
YLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRREN WAFE
Sbjct: 100 YLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENAWAFE 153
>dbj|BAB85607.1| kinetochore protein [Brassica juncea]
Length = 160
Score = 196 bits (497), Expect = 2e-49
Identities = 96/119 (80%), Positives = 108/119 (90%), Gaps = 6/119 (5%)
Frame = -1
Query: 565 IPLPNVTSKILARVIEYCKKHVEASSS------GEKPTEEELKQWDAEFVKVDQATLFDL 404
IPLPNVTSKILA+VIEYCKKHV+A++S G ++++LK WDAEF+K+DQATLF+L
Sbjct: 42 IPLPNVTSKILAKVIEYCKKHVDAAASKTEAVDGGASSDDDLKAWDAEFMKIDQATLFEL 101
Query: 403 ILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 227
ILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 102 ILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>ref|NP_565123.1| E3 ubiquitin ligase SCF complex subunit, SKP1/ASK1 (At1); protein
id: At1g75950.1, supported by cDNA: gi_1432082,
supported by cDNA: gi_19424109, supported by cDNA:
gi_21281126, supported by cDNA: gi_3068806, supported by
cDNA: gi_3719208 [Arabidopsis thaliana]
gi|11291720|pir||T51309 Skp1 homolog [imported] -
Arabidopsis thaliana gi|1432083|gb|AAB17535.1| homolog
to Skp1p, an evolutionarily conserved kinetochore
protein in budding yeast [Arabidopsis thaliana]
gi|3068807|gb|AAC14444.1| Skp1 homolog [Arabidopsis
thaliana] gi|3719209|gb|AAC63109.1| UIP1 [Arabidopsis
thaliana] gi|6721107|gb|AAF26761.1|AC007396_10 T4O12.17
[Arabidopsis thaliana] gi|19424110|gb|AAL87354.1|
putative SKP1/ASK1 protein At1 [Arabidopsis thaliana]
gi|21281127|gb|AAM45019.1| putative SKP1/ASK1 protein
At1 [Arabidopsis thaliana]
Length = 160
Score = 194 bits (494), Expect = 5e-49
Identities = 94/119 (78%), Positives = 108/119 (89%), Gaps = 6/119 (5%)
Frame = -1
Query: 565 IPLPNVTSKILARVIEYCKKHVEASSS------GEKPTEEELKQWDAEFVKVDQATLFDL 404
+PLPNVTSKILA+VIEYCK+HVEA++S G ++++LK WDA+F+K+DQATLF+L
Sbjct: 42 VPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFEL 101
Query: 403 ILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 227
ILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 102 ILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>dbj|BAB85608.1| kinetochore protein [Brassica juncea]
Length = 160
Score = 193 bits (491), Expect = 1e-48
Identities = 94/119 (78%), Positives = 108/119 (89%), Gaps = 6/119 (5%)
Frame = -1
Query: 565 IPLPNVTSKILARVIEYCKKHVEASSS------GEKPTEEELKQWDAEFVKVDQATLFDL 404
+PLPNVTSKILA+VIEYCKKHV+A++S G ++++LK WDAEF+K+DQATLF+L
Sbjct: 42 VPLPNVTSKILAKVIEYCKKHVDAAASKSEAVDGGGSSDDDLKAWDAEFMKIDQATLFEL 101
Query: 403 ILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 227
ILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+PEEEEEVRRENQWAFE
Sbjct: 102 ILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFSPEEEEEVRRENQWAFE 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,464,599
Number of Sequences: 1393205
Number of extensions: 10015117
Number of successful extensions: 30135
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 28603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29925
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
