Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005627A_C01 KMC005627A_c01
(363 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_145910.3| olfactory receptor MOR220-3 [Mus musculus] 30 7.7
gb|AAL61142.1| olfactory receptor MOR220-3 [Mus musculus] 30 7.7
ref|NP_772111.1| bll5471 [Bradyrhizobium japonicum] gi|27353747|... 30 7.7
gb|AAB03779.1| ECM 18 30 10.0
ref|NP_498278.1| Putative secreted or extracellular protein fami... 30 10.0
>ref|XP_145910.3| olfactory receptor MOR220-3 [Mus musculus]
Length = 305
Score = 30.0 bits (66), Expect = 7.7
Identities = 21/90 (23%), Positives = 38/90 (41%), Gaps = 2/90 (2%)
Frame = -3
Query: 340 LYVVTLTTSDQTVAVHGHFIRIKLLAACFCFMKITLPPIPTRLCI--LVDSSSNCIEGDR 167
L ++ +TT DQT+ +F L C++ IT+P CI L D + + G
Sbjct: 36 LTIIIVTTVDQTLNTPMYFFLRNLSILDMCYVSITVP----NACINSLTDHRNISVTGCA 91
Query: 166 SYVMLGSICYMILHS*FIAFFTDQNILVCR 77
+ + L C + D+ + +C+
Sbjct: 92 AQIFLFFFCACVEVQFLTIMAQDRYVAICK 121
>gb|AAL61142.1| olfactory receptor MOR220-3 [Mus musculus]
Length = 309
Score = 30.0 bits (66), Expect = 7.7
Identities = 21/90 (23%), Positives = 38/90 (41%), Gaps = 2/90 (2%)
Frame = -3
Query: 340 LYVVTLTTSDQTVAVHGHFIRIKLLAACFCFMKITLPPIPTRLCI--LVDSSSNCIEGDR 167
L ++ +TT DQT+ +F L C++ IT+P CI L D + + G
Sbjct: 41 LTIIIVTTVDQTLNTPMYFFLRNLSILDMCYVSITVP----NACINSLTDHRNISVTGCA 96
Query: 166 SYVMLGSICYMILHS*FIAFFTDQNILVCR 77
+ + L C + D+ + +C+
Sbjct: 97 AQIFLFFFCACVEVQFLTIMAQDRYVAICK 126
>ref|NP_772111.1| bll5471 [Bradyrhizobium japonicum] gi|27353747|dbj|BAC50736.1|
bll5471 [Bradyrhizobium japonicum USDA 110]
Length = 4210
Score = 30.0 bits (66), Expect = 7.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 346 IRLYVVTLTTSDQTVAVH-GHFIRIKLLAACFCFMKITLPPIPTRLCILVDSSS 188
+R + + +DQ V VH G+ ++KL + KITL + +L IL D+ S
Sbjct: 22 VRTFTLAKPLTDQAVVVHLGYDQKVKLDFSAIANEKITLVHVGEKLIILFDNKS 75
>gb|AAB03779.1| ECM 18
Length = 505
Score = 29.6 bits (65), Expect = 10.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -3
Query: 229 PIPTRLCILVDSSSNCI----EGDRSYVMLGSICYMILHS*FIAFFTDQNILVC 80
P+P L + D + C+ EGD Y M GS C I + F T Q +L C
Sbjct: 364 PVPCLLPFVRDENGECVPPTCEGDLVYDMCGSACPDICNEEPAQFCTFQCVLDC 417
>ref|NP_498278.1| Putative secreted or extracellular protein family member precursor,
nematode specific [Caenorhabditis elegans]
gi|1176678|sp|Q09245|YP97_CAEEL HYPOTHETICAL 33.3 KD
PROTEIN C28H8.7 IN CHROMOSOME III
gi|25395767|pir||C88469 protein C28H8.7 [imported] -
Caenorhabditis elegans gi|669013|gb|AAA62295.1|
Hypothetical protein C28H8.7 [Caenorhabditis elegans]
Length = 283
Score = 29.6 bits (65), Expect = 10.0
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3
Query: 12 GSLTIYLNF*SNT*GITHFSTYLQTRMFWSVKNAIN 119
GSL YLN S + GI HFSTYL+T++ V + I+
Sbjct: 162 GSLANYLNQ-SESAGIGHFSTYLKTQVNHKVIDLIS 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,614,753
Number of Sequences: 1393205
Number of extensions: 6256891
Number of successful extensions: 10663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10663
length of database: 448,689,247
effective HSP length: 96
effective length of database: 314,941,567
effective search space used: 7558597608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
