Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005620A_C01 KMC005620A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T47594 hypothetical protein T12E18.40 - Arabidopsis thalian... 44 0.001
ref|NP_566998.1| putative protein; protein id: At3g54350.1 [Arab... 44 0.001
gb|AAO37521.1| unknown protein [Oryza sativa (japonica cultivar-... 33 1.8
ref|NP_388256.1| similar to transporter [Bacillus subtilis] gi|7... 32 6.7
ref|NP_266376.1| IMP dehydrogenase (EC 1.1.1.205) [Lactococcus l... 32 6.7
>pir||T47594 hypothetical protein T12E18.40 - Arabidopsis thaliana
gi|7288013|emb|CAB81800.1| putative protein [Arabidopsis
thaliana]
Length = 735
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/33 (54%), Positives = 27/33 (81%)
Frame = -2
Query: 550 GQCQRLHSDYLIELKSMPFIFETNESCVKQFLE 452
GQ L SD L+E++ MPFIFETN+SC++++L+
Sbjct: 697 GQSLILKSDCLVEIRGMPFIFETNQSCMQEYLK 729
>ref|NP_566998.1| putative protein; protein id: At3g54350.1 [Arabidopsis thaliana]
Length = 702
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/33 (54%), Positives = 27/33 (81%)
Frame = -2
Query: 550 GQCQRLHSDYLIELKSMPFIFETNESCVKQFLE 452
GQ L SD L+E++ MPFIFETN+SC++++L+
Sbjct: 664 GQSLILKSDCLVEIRGMPFIFETNQSCMQEYLK 696
>gb|AAO37521.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 856
Score = 33.5 bits (75), Expect = 1.8
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 544 CQR--LHSDYLIELKSMPFIFETNESCVKQFL 455
C+R L SD LIE+K M FIF N+ V QF+
Sbjct: 817 CKRIILSSDSLIEIKDMRFIFHVNQDAVTQFV 848
>ref|NP_388256.1| similar to transporter [Bacillus subtilis] gi|7475935|pir||F69762
transporter homolog yclI - Bacillus subtilis
gi|1805444|dbj|BAA09006.1| homologue of hypothetical
protein in a rapamycin synthesis gene cluster of
Streptomyces hygroscopicus [Bacillus subtilis]
gi|2632675|emb|CAB12182.1| yclI [Bacillus subtilis
subsp. subtilis str. 168]
Length = 486
Score = 31.6 bits (70), Expect = 6.7
Identities = 26/75 (34%), Positives = 34/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 120 VQTVVCVLGTCISNKVSDSAWAVTRSTQGWDEFAISELGG*RIINLHRQRNMGK--NSEE 293
V TV+CV S A+ + Q E A ELGG + + RQ+ M K +S E
Sbjct: 24 VFTVICVFVL--------SGLAIQSAAQKSSELARQELGGSVTLQVDRQKQMEKQQDSGE 75
Query: 294 LQKFSIPPIKVWTCN 338
+ F PIKV N
Sbjct: 76 KRTFESTPIKVSDAN 90
>ref|NP_266376.1| IMP dehydrogenase (EC 1.1.1.205) [Lactococcus lactis subsp. lactis]
gi|25283993|pir||D86652 IMP dehydrogenase (EC 1.1.1.205)
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403) gi|12723077|gb|AAK04318.1|AE006260_1 IMP
dehydrogenase (EC 1.1.1.205) [Lactococcus lactis subsp.
lactis]
Length = 493
Score = 31.6 bits (70), Expect = 6.7
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 165 VSDSAWAVTRSTQGWDEFAISELGG*RIINLHRQRNMGKNSEELQKFSIPPIKVWTCNSR 344
V+DS A++ + QG LG +H+ ++ + +EE+ K V T
Sbjct: 56 VTDSKMAISMARQGG-------LGV-----VHKNMSVEEQAEEIHKVKRSESGVITDPFF 103
Query: 345 VTP*QKSESAEEIRSTFCVSG-PLA-TIYNYTPWSVICSRNCFTQLSFVSNMNGMLFN 512
+TP K E AE + +T+ +SG P+ T+ N +I +R+ L F+++ N + N
Sbjct: 104 LTPNHKIEEAENLMATYRISGVPIVDTLENRKLVGIITNRD----LRFITDYNQQIKN 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,900,612
Number of Sequences: 1393205
Number of extensions: 9845861
Number of successful extensions: 28058
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 27467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28055
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
