Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005618A_C01 KMC005618A_c01
(935 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_045801.1| photosystem II protein D2 [Chlorella vulgaris] ... 186 1e-64
prf||1209190A photosystem II protein D2 180 1e-63
sp|P06007|PSBD_CHLRE Photosystem II D2 protein (Photosystem Q(A)... 180 1e-63
ref|NP_045019.1| photosystem II protein D2 [Cyanidium caldarium]... 178 6e-61
ref|NP_053967.1| photosystem II protein D2 [Porphyra purpurea] g... 177 2e-60
>ref|NP_045801.1| photosystem II protein D2 [Chlorella vulgaris]
gi|3024458|sp|P56319|PSBD_CHLVU Photosystem II D2
protein (Photosystem Q(A) protein) (PSII D2 protein)
gi|7443113|pir||T07229 photosystem II protein D2 -
Chlorella vulgaris chloroplast
gi|2224392|dbj|BAA57876.1| photosystem II D2 protein
[Chlorella vulgaris]
Length = 352
Score = 186 bits (472), Expect(2) = 1e-64
Identities = 86/102 (84%), Positives = 94/102 (91%)
Frame = +3
Query: 504 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 683
MTIA+GK T+++ LFD++DDWLRRDRFVFVGWSGLLLFP AY ALGGWFTGTTFVTSWY
Sbjct: 1 MTIAIGK-TQEKRGLFDVVDDWLRRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWY 59
Query: 684 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGRF 809
THGLA+SYLEGCNFLTAAVSTPANS+ HSLL LWGPEAQG F
Sbjct: 60 THGLATSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDF 101
Score = 84.0 bits (206), Expect(2) = 1e-64
Identities = 36/43 (83%), Positives = 40/43 (92%)
Frame = +1
Query: 805 DFTRWCQLGGPWTLVALHGAFGLIGFMLRQFELARSVQLRPYN 933
DFTRWCQLGG WT VALHG+F LIGFMLRQFE+ARSV++RPYN
Sbjct: 100 DFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARSVKIRPYN 142
>prf||1209190A photosystem II protein D2
Length = 363
Score = 180 bits (457), Expect(2) = 1e-63
Identities = 83/102 (81%), Positives = 92/102 (89%)
Frame = +3
Query: 504 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 683
MTIA+G + +++ FD DDWLR+DRFVFVGWSGLLLFPCAYFALGGW TGTTFVTSWY
Sbjct: 12 MTIAIGTY-QEKRTWFDDADDWLRQDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWY 70
Query: 684 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGRF 809
THGLA+SYLEGCNFLTAAVSTPANS+AHSLL +WGPEAQG F
Sbjct: 71 THGLATSYLEGCNFLTAAVSTPANSMAHSLLFVWGPEAQGDF 112
Score = 85.9 bits (211), Expect(2) = 1e-63
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +1
Query: 805 DFTRWCQLGGPWTLVALHGAFGLIGFMLRQFELARSVQLRPYN 933
DFTRWCQLGG W VALHGAFGLIGFMLRQFE+ARSV LRPYN
Sbjct: 111 DFTRWCQLGGLWAFVALHGAFGLIGFMLRQFEIARSVNLRPYN 153
>sp|P06007|PSBD_CHLRE Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2
protein) gi|81251|pir||A25466 photosystem II protein D2
- Chlamydomonas reinhardtii chloroplast
gi|11449|emb|CAA27766.1| D2 protein (aa 1-352)
[Chlamydomonas reinhardtii] gi|28269786|tpg|DAA00964.1|
TPA: photosystem II reaction center protein D2
[Chlamydomonas reinhardtii]
Length = 352
Score = 180 bits (457), Expect(2) = 1e-63
Identities = 83/102 (81%), Positives = 92/102 (89%)
Frame = +3
Query: 504 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 683
MTIA+G + +++ FD DDWLR+DRFVFVGWSGLLLFPCAYFALGGW TGTTFVTSWY
Sbjct: 1 MTIAIGTY-QEKRTWFDDADDWLRQDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWY 59
Query: 684 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGRF 809
THGLA+SYLEGCNFLTAAVSTPANS+AHSLL +WGPEAQG F
Sbjct: 60 THGLATSYLEGCNFLTAAVSTPANSMAHSLLFVWGPEAQGDF 101
Score = 85.9 bits (211), Expect(2) = 1e-63
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +1
Query: 805 DFTRWCQLGGPWTLVALHGAFGLIGFMLRQFELARSVQLRPYN 933
DFTRWCQLGG W VALHGAFGLIGFMLRQFE+ARSV LRPYN
Sbjct: 100 DFTRWCQLGGLWAFVALHGAFGLIGFMLRQFEIARSVNLRPYN 142
>ref|NP_045019.1| photosystem II protein D2 [Cyanidium caldarium]
gi|14547994|sp|Q9TM47|PSBD_CYACA Photosystem II D2
protein (Photosystem Q(A) protein) (PSII D2 protein)
gi|6466445|gb|AAF13026.1|AF022186_200 unknown;
Photosystem II D2 protein [Cyanidium caldarium]
Length = 351
Score = 178 bits (452), Expect(2) = 6e-61
Identities = 80/102 (78%), Positives = 91/102 (88%)
Frame = +3
Query: 504 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 683
MTIA+G+ + E FD++DDWL+RDRFVF+GWSG+LLFPCAY ALG WFTGTTFV+SWY
Sbjct: 1 MTIAIGR--EQERGWFDLLDDWLKRDRFVFIGWSGILLFPCAYLALGAWFTGTTFVSSWY 58
Query: 684 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGRF 809
THGLASSYLEGCNFLTAAVS+PANS+ HSLL LWGPEAQG F
Sbjct: 59 THGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDF 100
Score = 79.0 bits (193), Expect(2) = 6e-61
Identities = 34/43 (79%), Positives = 37/43 (85%)
Frame = +1
Query: 805 DFTRWCQLGGPWTLVALHGAFGLIGFMLRQFELARSVQLRPYN 933
DFTRWCQ+GG WT ALHG+FGLIGF LRQFE+AR V LRPYN
Sbjct: 99 DFTRWCQIGGLWTFTALHGSFGLIGFCLRQFEIARLVGLRPYN 141
>ref|NP_053967.1| photosystem II protein D2 [Porphyra purpurea]
gi|1709834|sp|P51357|PSBD_PORPU Photosystem II D2
protein (Photosystem Q(A) protein) (PSII D2 protein)
gi|2147928|pir||S73278 photosystem II protein D2 - red
alga (Porphyra purpurea) chloroplast
gi|1276823|gb|AAC08243.1| Photosystem II D2 protein
[Porphyra purpurea]
Length = 351
Score = 177 bits (449), Expect(2) = 2e-60
Identities = 82/102 (80%), Positives = 90/102 (87%)
Frame = +3
Query: 504 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 683
MTIA+G+ + FD++DDWL+RDRFVFVGWSGLLLFPCAY A+GGW TGTTFVTSWY
Sbjct: 1 MTIAIGQ--EKTRGGFDLVDDWLKRDRFVFVGWSGLLLFPCAYLAVGGWLTGTTFVTSWY 58
Query: 684 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGRF 809
THGLASSYLEGCNFLTAAVSTPANS+ HSLL LWGPEAQG F
Sbjct: 59 THGLASSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDF 100
Score = 78.2 bits (191), Expect(2) = 2e-60
Identities = 33/43 (76%), Positives = 37/43 (85%)
Frame = +1
Query: 805 DFTRWCQLGGPWTLVALHGAFGLIGFMLRQFELARSVQLRPYN 933
DFTRWCQ+GG W +ALHG+FGLIGF LRQFE+AR V LRPYN
Sbjct: 99 DFTRWCQIGGLWAFIALHGSFGLIGFCLRQFEIARLVGLRPYN 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 783,427,100
Number of Sequences: 1393205
Number of extensions: 17736552
Number of successful extensions: 43949
Number of sequences better than 10.0: 341
Number of HSP's better than 10.0 without gapping: 41366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43888
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52137106016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
