Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005614A_C01 KMC005614A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B96671 similar to translational activator [imported] - Arab... 35 0.50
ref|NP_176659.1| hypothetical protein; protein id: At1g64790.1 [... 35 0.50
gb|EAA21469.1| hypothetical protein [Plasmodium yoelii yoelii] 32 3.3
gb|ZP_00017726.1| hypothetical protein [Chloroflexus aurantiacus] 32 4.2
ref|NP_704042.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.5
>pir||B96671 similar to translational activator [imported] - Arabidopsis thaliana
gi|5042415|gb|AAD38254.1|AC006193_10 similar to
translational activator [Arabidopsis thaliana]
Length = 2698
Score = 35.0 bits (79), Expect = 0.50
Identities = 16/24 (66%), Positives = 19/24 (78%)
Frame = -1
Query: 511 LDARRLSKLPEYSDASEDSDEDMS 440
LDARRLSK PE SD SE D+++S
Sbjct: 2674 LDARRLSKFPEQSDDSESDDDNVS 2697
>ref|NP_176659.1| hypothetical protein; protein id: At1g64790.1 [Arabidopsis thaliana]
Length = 2428
Score = 35.0 bits (79), Expect = 0.50
Identities = 16/24 (66%), Positives = 19/24 (78%)
Frame = -1
Query: 511 LDARRLSKLPEYSDASEDSDEDMS 440
LDARRLSK PE SD SE D+++S
Sbjct: 2404 LDARRLSKFPEQSDDSESDDDNVS 2427
>gb|EAA21469.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 469
Score = 32.3 bits (72), Expect = 3.3
Identities = 25/74 (33%), Positives = 38/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 282 KNWVNSLRVVYTYIMDCNSATKGFGYE*EFRIPTLERRGKNKKLDERR--TA*LVDISSS 455
K + L Y Y + ++ K F E R+ ++ KNKK++ER+ T+ DISSS
Sbjct: 224 KEEIEKLPFPYFYNVAIHTLFKFFSPE---RVKVKRKKQKNKKINERKNHTSVSSDISSS 280
Query: 456 LSSLASLYSGSFDS 497
SS S G ++S
Sbjct: 281 SSSTNSSGKGGYNS 294
>gb|ZP_00017726.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 412
Score = 32.0 bits (71), Expect = 4.2
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 483 LNIVMPVKTVMKICQ-LAKQFVFHQVFCSSLSFPGWGYGILIHNQIPWSHCYSP*YRY 313
+N V P+ ++I + A Q V + F S P G G +H+ +PW H +P +RY
Sbjct: 7 INRVAPIPLPLRIVEEFAVQIVINGSFWSQ---PTVGIGQYLHHLLPWLHRLAPQHRY 61
>ref|NP_704042.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498780|emb|CAD50850.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2310
Score = 31.6 bits (70), Expect = 5.5
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Frame = +1
Query: 49 HNFHIHTKV----------TNYSSYNHILNATNPSSVTR*WVRPP*FENKHNIYYHQNG* 198
HN HTKV N YNH N N ++ + N + +Y H N
Sbjct: 585 HNKKKHTKVGMKNKNNIYNNNNKMYNHKNNIYNNNNKM--------YNNNNKMYNHNNNV 636
Query: 199 SNRNKEVTDHSPHL--IYNDIDTF 264
+N N V +H+ + YN++ F
Sbjct: 637 NNHNNNVNNHNSYYYNYYNNVYGF 660
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,362,650
Number of Sequences: 1393205
Number of extensions: 10023230
Number of successful extensions: 21749
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21727
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
