Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005603A_C01 KMC005603A_c01
(717 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN60990.1| Putative Nonclathrin coat protein gamma - like pr... 312 3e-84
ref|NP_195171.1| Nonclathrin coat protein gamma - like protein; ... 311 8e-84
dbj|BAA93048.2| nonclathrin coat protein gamma2-COP [Bombyx mori] 213 2e-54
gb|EAA14827.1| agCP4660 [Anopheles gambiae str. PEST] 212 5e-54
dbj|BAA93047.2| nonclathrin coat protein gamma1-COP [Bombyx mori] 210 2e-53
>gb|AAN60990.1| Putative Nonclathrin coat protein gamma - like protein [Oryza
sativa (japonica cultivar-group)]
Length = 826
Score = 312 bits (800), Expect = 3e-84
Identities = 159/186 (85%), Positives = 171/186 (91%)
Frame = +1
Query: 160 PSWELKRGLFFREARVFTDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLF 339
P + +++G +EAR F DPQLDAR+CSQVITKLLYLLNQGETFTKVEATEVFFAVTKLF
Sbjct: 19 PFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLF 78
Query: 340 QSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLL 519
QSKD GLRR+VYLMIKE+SPS+DEVIIVTSSLMKDMNSK DMYRANAIRVLCRI DGTLL
Sbjct: 79 QSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTLL 138
Query: 520 AQMERYLKQAIVDKNPVVASAALISGIHLLHTNPEIVRRWSNEVQEAVQSRAALVQFHAL 699
Q+ERYLKQAIVDKNPVVASAAL+SGIHLL NPEIV+RWSNEVQEAVQSR ALVQFH L
Sbjct: 139 TQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVKRWSNEVQEAVQSRFALVQFHGL 198
Query: 700 ALLHQI 717
ALLHQI
Sbjct: 199 ALLHQI 204
Score = 60.5 bits (145), Expect = 2e-08
Identities = 28/39 (71%), Positives = 32/39 (81%)
Frame = +3
Query: 102 MGQPFMKKDDDRDDEVEYSPFLGIEKGAVLQRGKGFH*P 218
M QP+MKKDDD D++VEYSPF GIEKGAVLQ + FH P
Sbjct: 1 MAQPYMKKDDD-DEDVEYSPFYGIEKGAVLQEARAFHDP 38
>ref|NP_195171.1| Nonclathrin coat protein gamma - like protein; protein id:
At4g34450.1 [Arabidopsis thaliana]
gi|7484873|pir||T05265 coat protein gamma-COP homolog
T4L20.30 - Arabidopsis thaliana
gi|3641837|emb|CAA18824.1| Nonclathrin coat protein
gamma-like protein [Arabidopsis thaliana]
gi|7270395|emb|CAB80162.1| Nonclathrin coat protein
gamma-like protein [Arabidopsis thaliana]
Length = 831
Score = 311 bits (796), Expect = 8e-84
Identities = 156/186 (83%), Positives = 173/186 (92%)
Frame = +1
Query: 160 PSWELKRGLFFREARVFTDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLF 339
P +++G +EARVF DPQ+D RRCSQVITKLLYLLNQGE+FTKVEATEVFF+VTKLF
Sbjct: 20 PFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQGESFTKVEATEVFFSVTKLF 79
Query: 340 QSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLL 519
QSKD GLRRMVYL+IKE+SPS+DEVIIVTSSLMKDMNSKIDMYRANAIRVLCRI DGTLL
Sbjct: 80 QSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMYRANAIRVLCRIIDGTLL 139
Query: 520 AQMERYLKQAIVDKNPVVASAALISGIHLLHTNPEIVRRWSNEVQEAVQSRAALVQFHAL 699
Q+ERYLKQAIVDKNPVV+SAAL+SG+HLL TNPEIV+RWSNEVQE +QSR+ALVQFHAL
Sbjct: 140 TQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWSNEVQEGIQSRSALVQFHAL 199
Query: 700 ALLHQI 717
ALLHQI
Sbjct: 200 ALLHQI 205
Score = 61.2 bits (147), Expect = 1e-08
Identities = 27/39 (69%), Positives = 32/39 (81%)
Frame = +3
Query: 102 MGQPFMKKDDDRDDEVEYSPFLGIEKGAVLQRGKGFH*P 218
M QP +KKDDD DDE+EYSPF+GIEKGAVLQ + F+ P
Sbjct: 1 MAQPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDP 39
>dbj|BAA93048.2| nonclathrin coat protein gamma2-COP [Bombyx mori]
Length = 860
Score = 213 bits (543), Expect = 2e-54
Identities = 108/187 (57%), Positives = 137/187 (72%)
Frame = +1
Query: 148 SSIPPSWELKRGLFFREARVFTDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAV 327
+S P L + + +E R F + R+CS ++TK+LYLLNQGE FT EAT+ FFA
Sbjct: 11 NSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATDAFFAT 70
Query: 328 TKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITD 507
TKLFQSK++ LRRMVYL IKE+S A +VIIVTSSL KDM K D+YRA AIR LC ITD
Sbjct: 71 TKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITD 130
Query: 508 GTLLAQMERYLKQAIVDKNPVVASAALISGIHLLHTNPEIVRRWSNEVQEAVQSRAALVQ 687
++L +ERY+KQAIVDKNP V+SAAL+S +HL T P++VRRW+NE QE + S A+V
Sbjct: 131 ASMLQAIERYMKQAIVDKNPAVSSAALVSALHLSSTAPDLVRRWANEAQETINSDNAMVS 190
Query: 688 FHALALL 708
+HAL +L
Sbjct: 191 YHALGVL 197
>gb|EAA14827.1| agCP4660 [Anopheles gambiae str. PEST]
Length = 878
Score = 212 bits (539), Expect = 5e-54
Identities = 106/186 (56%), Positives = 138/186 (73%)
Frame = +1
Query: 160 PSWELKRGLFFREARVFTDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLF 339
P L++ +E R+F + ++AR+C+ ++TK+LYLLNQGE EATE FFA+TKLF
Sbjct: 18 PWQNLEKTSVLQETRMFNETPVNARKCTHILTKILYLLNQGEVLGTREATECFFAMTKLF 77
Query: 340 QSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLL 519
QSKD+ +RRMVYL IKE+SP AD+VIIVTSSL KDM K D+YRA AIR LC ITD T+L
Sbjct: 78 QSKDVVMRRMVYLGIKELSPIADDVIIVTSSLTKDMTGKEDLYRAPAIRALCSITDSTML 137
Query: 520 AQMERYLKQAIVDKNPVVASAALISGIHLLHTNPEIVRRWSNEVQEAVQSRAALVQFHAL 699
+ERY+KQ IVD+N V+S AL+S +HL T E+V+RW+NE QEA+ S +VQ+H L
Sbjct: 138 QAVERYMKQCIVDRNAPVSSGALVSSLHLASTAGEVVKRWANEAQEALNSDNIMVQYHGL 197
Query: 700 ALLHQI 717
LL+ I
Sbjct: 198 GLLYHI 203
>dbj|BAA93047.2| nonclathrin coat protein gamma1-COP [Bombyx mori]
Length = 861
Score = 210 bits (534), Expect = 2e-53
Identities = 106/179 (59%), Positives = 131/179 (72%)
Frame = +1
Query: 172 LKRGLFFREARVFTDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKD 351
L + +EAR F + R+C ++TK+LYLLNQGE T EAT++FFA TKLFQSKD
Sbjct: 18 LDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKD 77
Query: 352 MGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLAQME 531
+ LRR+VYL IKE+SP A +VIIVTSSL KDM K D YR AIR LC ITD T+L +E
Sbjct: 78 VVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQAIE 137
Query: 532 RYLKQAIVDKNPVVASAALISGIHLLHTNPEIVRRWSNEVQEAVQSRAALVQFHALALL 708
RY+KQAIVDKNP V SAAL+S +HL T P++VRRW NE QEA+ S +V +HALA++
Sbjct: 138 RYMKQAIVDKNPAVGSAALVSALHLSATVPDLVRRWINEAQEAMTSDHVMVSYHALAVV 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,556,692
Number of Sequences: 1393205
Number of extensions: 13237171
Number of successful extensions: 36829
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 35579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36804
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
