Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005602A_C01 KMC005602A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM28630.1|AF503911_1 delta 1-pyrroline-5-carboxylate synthet... 115 3e-25
gb|AAK01361.1|AF314812_1 delta 1-pyrroline-5-carboxylate synthet... 111 6e-24
pir||T09649 delta-1-pyrroline-5-carboxylate synthase - alfalfa g... 110 1e-23
sp|O65361|P5CS_MESCR Delta 1-pyrroline-5-carboxylate synthetase ... 109 3e-23
sp|O04015|P5CS_ACTCH Delta 1-pyrroline-5-carboxylate synthetase ... 109 3e-23
>gb|AAM28630.1|AF503911_1 delta 1-pyrroline-5-carboxylate synthetase [Suaeda maritima subsp.
salsa]
Length = 226
Score = 115 bits (289), Expect = 3e-25
Identities = 57/71 (80%), Positives = 61/71 (85%), Gaps = 8/71 (11%)
Frame = -3
Query: 387 GSAHTDCIVAEDHEAADVFLRQVDS--------TRFCDGALFGLGAEVGISTSRIHARGP 232
GSAHTDC+VAEDH+ A+VFL+QVDS TRFCDGA FGLGAEVGISTSRIHARGP
Sbjct: 130 GSAHTDCVVAEDHKVAEVFLQQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGP 189
Query: 231 VGVEGLLTTRW 199
VGVEGLLTTRW
Sbjct: 190 VGVEGLLTTRW 200
Score = 37.7 bits (86), Expect = 0.12
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = -2
Query: 607 SSLACTVEIVDDVHAAIDHINLYG 536
+S ACTVEIV+DV AAI+HIN +G
Sbjct: 107 NSPACTVEIVEDVFAAIEHINQHG 130
>gb|AAK01361.1|AF314812_1 delta 1-pyrroline-5-carboxylate synthetase B [Brassica napus]
Length = 727
Score = 111 bits (278), Expect = 6e-24
Identities = 56/71 (78%), Positives = 58/71 (80%), Gaps = 8/71 (11%)
Frame = -3
Query: 387 GSAHTDCIVAEDHEAADVFLRQVDS--------TRFCDGALFGLGAEVGISTSRIHARGP 232
GSAHTDCIV ED E A++FLRQVDS TRFCDG FGLGAEVGISTSRIHARGP
Sbjct: 622 GSAHTDCIVTEDSEVAEIFLRQVDSAAVIHNASTRFCDGFRFGLGAEVGISTSRIHARGP 681
Query: 231 VGVEGLLTTRW 199
VGVEGLLTTRW
Sbjct: 682 VGVEGLLTTRW 692
Score = 40.8 bits (94), Expect = 0.014
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2
Query: 607 SSLACTVEIVDDVHAAIDHINLYG 536
SS ACTVEIV+DVH AIDHI+ +G
Sbjct: 599 SSKACTVEIVEDVHGAIDHIHQHG 622
>pir||T09649 delta-1-pyrroline-5-carboxylate synthase - alfalfa
gi|1419036|emb|CAA67069.1|
delta-1-pyrroline-5-carboxylate synthase [Medicago
sativa]
Length = 752
Score = 110 bits (276), Expect = 1e-23
Identities = 57/75 (76%), Positives = 60/75 (80%), Gaps = 8/75 (10%)
Frame = -3
Query: 399 LSFCGSAHTDCIVAEDHEAADVFLRQVDS--------TRFCDGALFGLGAEVGISTSRIH 244
++ GSAHTD IV EDHE ADVFLRQVDS TRF DGA FGLGAEVGISTSRIH
Sbjct: 654 INLYGSAHTDSIVTEDHEVADVFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIH 713
Query: 243 ARGPVGVEGLLTTRW 199
ARGPVGV+GLLTTRW
Sbjct: 714 ARGPVGVDGLLTTRW 728
Score = 44.7 bits (104), Expect = 0.001
Identities = 20/23 (86%), Positives = 22/23 (94%)
Frame = -2
Query: 604 SLACTVEIVDDVHAAIDHINLYG 536
SLACT+EIVDDV+AAI HINLYG
Sbjct: 636 SLACTLEIVDDVYAAIHHINLYG 658
>sp|O65361|P5CS_MESCR Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes:
Glutamate 5-kinase (Gamma-glutamyl kinase) (GK);
Gamma-glutamyl phosphate reductase (GPR)
(Glutamate-5-semialdehyde dehydrogenase)
(Glutamyl-gamma-semialdehyde dehydrogenase)]
gi|7484636|pir||T12258 pyrroline-5-carboxylate
synthetase (EC 1.5.1.-) - common ice plant
gi|3176965|gb|AAC18862.1| pyrroline-5-carboxylate
synthetase [Mesembryanthemum crystallinum]
Length = 719
Score = 109 bits (272), Expect = 3e-23
Identities = 54/71 (76%), Positives = 58/71 (81%), Gaps = 8/71 (11%)
Frame = -3
Query: 387 GSAHTDCIVAEDHEAADVFLRQVDS--------TRFCDGALFGLGAEVGISTSRIHARGP 232
GSAHTDCI+AEDH+ A+ FL+ VDS TRFCDG FGLGAEVGISTSRIHARGP
Sbjct: 620 GSAHTDCIIAEDHKVAETFLQLVDSAAVLHNASTRFCDGFRFGLGAEVGISTSRIHARGP 679
Query: 231 VGVEGLLTTRW 199
VGVEGLLTTRW
Sbjct: 680 VGVEGLLTTRW 690
Score = 41.2 bits (95), Expect = 0.011
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -2
Query: 607 SSLACTVEIVDDVHAAIDHINLYG 536
SS ACTVEIVDDV+AAI+HIN +G
Sbjct: 597 SSPACTVEIVDDVYAAIEHINHHG 620
>sp|O04015|P5CS_ACTCH Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes:
Glutamate 5-kinase (Gamma-glutamyl kinase) (GK);
Gamma-glutamyl phosphate reductase (GPR)
(Glutamate-5-semialdehyde dehydrogenase)
(Glutamyl-gamma-semialdehyde dehydrogenase)]
gi|1928960|gb|AAC14481.1| pyrroline-5-carboxylate
synthetase [Actinidia deliciosa]
Length = 717
Score = 109 bits (272), Expect = 3e-23
Identities = 55/71 (77%), Positives = 58/71 (81%), Gaps = 8/71 (11%)
Frame = -3
Query: 387 GSAHTDCIVAEDHEAADVFLRQVDS--------TRFCDGALFGLGAEVGISTSRIHARGP 232
GSAHTD I+ EDHE A++FLRQVDS TRF DGA FGLGAEVGISTSRIHARGP
Sbjct: 621 GSAHTDSIITEDHEVAEIFLRQVDSSSVLHNASTRFSDGARFGLGAEVGISTSRIHARGP 680
Query: 231 VGVEGLLTTRW 199
VGVEGLLTTRW
Sbjct: 681 VGVEGLLTTRW 691
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = -2
Query: 607 SSLACTVEIVDDVHAAIDHINLYG 536
SSLACT+EIVDDV+AAIDHI+ +G
Sbjct: 598 SSLACTIEIVDDVYAAIDHIHRHG 621
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,395,238
Number of Sequences: 1393205
Number of extensions: 11675965
Number of successful extensions: 33063
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 31697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32935
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
