Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005599A_C01 KMC005599A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190446.1| hypothetical protein; protein id: At3g48770.1 [... 53 6e-16
pir||VJCH2 vitellogenin II precursor [validated] - chicken gi|21... 36 0.41
gb|AAA98791.1| Gallus gallus vitellogenin 36 0.41
sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitellogen... 36 0.41
ref|NP_717736.1| hypothetical protein [Shewanella oneidensis MR-... 34 1.6
>ref|NP_190446.1| hypothetical protein; protein id: At3g48770.1 [Arabidopsis thaliana]
gi|11289979|pir||T49273 hypothetical protein T21J18.40 -
Arabidopsis thaliana gi|7576215|emb|CAB87905.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1899
Score = 53.1 bits (126), Expect(2) = 6e-16
Identities = 24/54 (44%), Positives = 40/54 (73%)
Frame = -3
Query: 373 EGVLRENLEHIPELCELIQLGFVLKFEEEEIEFLMESKNLQISCEDEEFLSSAF 212
+GV+ E + I L EL+++ ++++F+EE +EFLM+SKNLQ+ EDE+ +S F
Sbjct: 1842 KGVMWEREDLIGRLSELVKMAYLVEFDEEALEFLMKSKNLQVYEEDEKLISDEF 1895
Score = 52.4 bits (124), Expect(2) = 6e-16
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = -2
Query: 587 VKGLLNLSFLETLEPITVSYSLSL-SSGDVITKKANRMVRWEGQGSQFFTHQMNGLSGNS 411
+ L+++ ET E IT Y+LSL S G+ + KA RM+RWE + + +M G
Sbjct: 1768 IHSLVDIDVKETSETITTEYTLSLPSKGEKLIAKAKRMIRWEREKGVVYAEKMEKTCGKR 1827
Query: 410 --LKYATYFSEAVSRG 369
L+YAT F+E +++G
Sbjct: 1828 KLLEYATCFAEVIAKG 1843
>pir||VJCH2 vitellogenin II precursor [validated] - chicken
gi|212881|gb|AAA49139.1| vitellogenin
Length = 1852
Score = 35.8 bits (81), Expect = 0.41
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 90 SLNDHKPRTRE----IKSK*NKETQNID*SNK*SLRSMQ*TYSDGNAELRNSSSSHEICR 257
S N KP E +K NK+ + S+K S S + + N+ R+SSSS
Sbjct: 1145 SPNRKKPMDEEENDQVKQARNKDASSSSRSSKSSNSSKRSSSKSSNSSKRSSSSSSSSSS 1204
Query: 258 FLDSIRNSISSSSNFSTKPNWMSSQSSGMCSRFSRRTPS 374
S +S SSSSN + + S SS SR S ++ S
Sbjct: 1205 SSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSS 1243
>gb|AAA98791.1| Gallus gallus vitellogenin
Length = 247
Score = 35.8 bits (81), Expect = 0.41
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 90 SLNDHKPRTRE----IKSK*NKETQNID*SNK*SLRSMQ*TYSDGNAELRNSSSSHEICR 257
S N KP E +K NK+ + S+K S S + + N+ R+SSSS
Sbjct: 52 SPNRKKPMDEEENDQVKQARNKDASSSSRSSKSSNSSKRSSSKSSNSSKRSSSSSSSSSS 111
Query: 258 FLDSIRNSISSSSNFSTKPNWMSSQSSGMCSRFSRRTPS 374
S +S SSSSN + + S SS SR S ++ S
Sbjct: 112 SSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSS 150
>sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitellogenin) [Contains:
Lipovitellin I (LVI); Phosvitin (PV); Lipovitellin II
(LVII); YGP40] gi|63887|emb|CAA31942.1| vitellogenin
[Gallus gallus]
Length = 1850
Score = 35.8 bits (81), Expect = 0.41
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 90 SLNDHKPRTRE----IKSK*NKETQNID*SNK*SLRSMQ*TYSDGNAELRNSSSSHEICR 257
S N KP E +K NK+ + S+K S S + + N+ R+SSSS
Sbjct: 1143 SPNRKKPMDEEENDQVKQARNKDASSSSRSSKSSNSSKRSSSKSSNSSKRSSSSSSSSSS 1202
Query: 258 FLDSIRNSISSSSNFSTKPNWMSSQSSGMCSRFSRRTPS 374
S +S SSSSN + + S SS SR S ++ S
Sbjct: 1203 SSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSS 1241
>ref|NP_717736.1| hypothetical protein [Shewanella oneidensis MR-1]
gi|24348053|gb|AAN55180.1|AE015655_6 hypothetical
protein [Shewanella oneidensis MR-1]
Length = 554
Score = 33.9 bits (76), Expect = 1.6
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -3
Query: 367 VLRENLEHIPELCELIQLGFVLKFEEEEIEFLMESKNLQISCEDEEFLSSA 215
VL EN++ I + +I + + EE++EFL++S IS +DE + S+
Sbjct: 449 VLSENIDDIEDRASMIHMIYHTFKHEEKLEFLIDSSGSLISLDDEVYTPSS 499
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,303,657
Number of Sequences: 1393205
Number of extensions: 9610006
Number of successful extensions: 25314
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24556
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
