Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005591A_C01 KMC005591A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_506624.1| Putative endoplasmic reticulum protein family m... 36 0.31
ref|NP_702873.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.70
ref|NP_632107.1| hypothetical protein [Methanosarcina mazei Goe1... 34 1.2
gb|AAK18067.1|AF246926_1 IcaA [Staphylococcus caprae] 33 2.7
gb|AAA62274.1| ORF1 33 3.5
>ref|NP_506624.1| Putative endoplasmic reticulum protein family member, nematode
specific [Caenorhabditis elegans] gi|7497575|pir||T20018
hypothetical protein C47E8.3 - Caenorhabditis elegans
gi|3875040|emb|CAA99792.1| Hypothetical protein C47E8.3
[Caenorhabditis elegans]
Length = 317
Score = 36.2 bits (82), Expect = 0.31
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = -2
Query: 225 LTNLDNKNCSSCKL---NSLVFASLFLIFL---YKYILFFSLFLVHHHHC-DFQDYTV 73
L D K S C+ + S F IFL YKY++++ L + HH HC DF +Y +
Sbjct: 44 LKTFDGKAISVCRKFLERNRYGVSAFCIFLACAYKYVIYYELDVDHHPHCTDFMEYEI 101
>ref|NP_702873.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498290|emb|CAD49262.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 524
Score = 35.0 bits (79), Expect = 0.70
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = -3
Query: 164 LFF*FSYINIYFFSLFF*STTIIVIFRIIQYNICLFVYY*LLFHIIFF 21
+F FS++ ++FF F+ ++I I YNICLF + LF +F
Sbjct: 463 IFISFSFLLLFFFFFFWLLENFLLIKNIYLYNICLFYLFIHLFINFYF 510
>ref|NP_632107.1| hypothetical protein [Methanosarcina mazei Goe1]
gi|20904416|gb|AAM29779.1| hypothetical protein
[Methanosarcina mazei Goe1]
Length = 70
Score = 34.3 bits (77), Expect = 1.2
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Frame = -3
Query: 182 IHWYLLLFF*FSYINIYFFSLFF*STTII-----VIFRIIQYNICLFVYY*L------LF 36
IH+YL FSYI IY+++L + S II IF I+ Y +FV++ L F
Sbjct: 4 IHFYL-----FSYIIIYYYTLLYISHIIIYFTYYYIFHILLYISYIFVHFYLSSYVFIYF 58
Query: 35 HIIFF 21
HII +
Sbjct: 59 HIILY 63
>gb|AAK18067.1|AF246926_1 IcaA [Staphylococcus caprae]
Length = 411
Score = 33.1 bits (74), Expect = 2.7
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = -3
Query: 245 TLYKEDFLQIWITRTAVHVSLIHWYLLL----FF*FSYINIYFFSLFF*STTIIVIFRII 78
+LY F QI I+ T V++ L++ LL F ++Y+ Y FS+FF S+ + II
Sbjct: 288 SLYILMFEQI-ISITWVYIILLYLAFLLMTANFLDYTYLK-YSFSIFFLSSFTMTFINII 345
Query: 77 QYNICLFV 54
Q+ + LF+
Sbjct: 346 QFTVALFI 353
>gb|AAA62274.1| ORF1
Length = 146
Score = 32.7 bits (73), Expect = 3.5
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 4/59 (6%)
Frame = -3
Query: 185 LIHWYLLLFF*FSYINIYFFSL----FF*STTIIVIFRIIQYNICLFVYY*LLFHIIFF 21
L+ W LFF + Y +YFF L FF + +F Y + FV + LF ++FF
Sbjct: 44 LVFWLYSLFFLWRYNFVYFFFLFCFVFFVLLFLFGLFGFFLYFLLCFVLFFDLFFMLFF 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,510,117
Number of Sequences: 1393205
Number of extensions: 10843219
Number of successful extensions: 29181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 27655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29085
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
