Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005581A_C01 KMC005581A_c01
(758 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084803.1| ATP synthase CF1 alpha chain [Lotus japonicus] ... 162 6e-39
ref|NP_054481.1| ATP synthase CF1 alpha chain [Nicotiana tabacum... 143 3e-33
ref|NP_783217.1| ATPase alpha subunit [Atropa belladonna] gi|200... 142 4e-33
sp|P06450|ATPA_SPIOL ATP synthase alpha chain gi|67825|pir||PWSP... 140 2e-32
ref|NP_054917.1| ATP synthase CF1 alpha chain [Spinacia oleracea... 140 2e-32
>ref|NP_084803.1| ATP synthase CF1 alpha chain [Lotus japonicus]
gi|23813720|sp|Q9BBS3|ATPA_LOTJA ATP synthase alpha
chain gi|13358984|dbj|BAB33201.1| ATPase alpha subunit
[Lotus japonicus]
Length = 510
Score = 162 bits (409), Expect = 6e-39
Identities = 86/95 (90%), Positives = 88/95 (92%)
Frame = -2
Query: 757 RLRELLKLSPSAPLPVEVQVMTIYTGTNGYLDSLAIRQVRKFLVELRAYLKTNKPPFHVI 578
RLRELLK S SAPL VE QV+TIYTGTNGYLDSL IRQVRKFLVELRAYLKTNKP F+ I
Sbjct: 416 RLRELLKQSQSAPLTVEEQVITIYTGTNGYLDSLEIRQVRKFLVELRAYLKTNKPQFNEI 475
Query: 577 ISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKN 473
ISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKN
Sbjct: 476 ISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKN 510
>ref|NP_054481.1| ATP synthase CF1 alpha chain [Nicotiana tabacum]
gi|114532|sp|P00823|ATPA_TOBAC ATP synthase alpha chain
gi|67824|pir||PWNTA H+-transporting two-sector ATPase
(EC 3.6.3.14) alpha chain - common tobacco chloroplast
gi|11769|emb|CAA23471.1| alpha subunit of ATPase
[Nicotiana tabacum] gi|11811|emb|CAA77341.1| ATPase
alpha subunit [Nicotiana tabacum]
gi|225270|prf||1211235E ATPase alpha
Length = 507
Score = 143 bits (360), Expect = 3e-33
Identities = 75/91 (82%), Positives = 79/91 (86%)
Frame = -2
Query: 757 RLRELLKLSPSAPLPVEVQVMTIYTGTNGYLDSLAIRQVRKFLVELRAYLKTNKPPFHVI 578
RLRELLK S SAPL VE Q+MTIYTGTNGYLDSL + QVRKFLVELR YLKTNKP F I
Sbjct: 416 RLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEI 475
Query: 577 ISSTKTFTGEAEALLKEAIQEQMELFLLQEQ 485
ISSTKTFT EAEALLKEAIQEQM+ F+LQEQ
Sbjct: 476 ISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506
>ref|NP_783217.1| ATPase alpha subunit [Atropa belladonna]
gi|20068316|emb|CAC88029.1| ATPase alpha subunit [Atropa
belladonna]
Length = 507
Score = 142 bits (359), Expect = 4e-33
Identities = 75/91 (82%), Positives = 79/91 (86%)
Frame = -2
Query: 757 RLRELLKLSPSAPLPVEVQVMTIYTGTNGYLDSLAIRQVRKFLVELRAYLKTNKPPFHVI 578
RLRELLK S SAPL VE Q+MTIYTGTNGYLDSL + QVRKFLVELR YLKTNKP F I
Sbjct: 416 RLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEI 475
Query: 577 ISSTKTFTGEAEALLKEAIQEQMELFLLQEQ 485
ISSTKTFT EAEALLKEAIQEQM+ F+LQEQ
Sbjct: 476 ISSTKTFTEEAEALLKEAIQEQMKRFILQEQ 506
>sp|P06450|ATPA_SPIOL ATP synthase alpha chain gi|67825|pir||PWSPA H+-transporting
two-sector ATPase (EC 3.6.3.14) alpha chain - spinach
chloroplast gi|15988216|pdb|1FX0|A Chain A, Crystal
Structure Of The Chloroplast F1-Atpase From Spinach
gi|20150923|pdb|1KMH|A Chain A, Crystal Structure Of
Spinach Chloroplast F1-Atpase Complexed With Tentoxin
Length = 507
Score = 140 bits (354), Expect = 2e-32
Identities = 75/91 (82%), Positives = 78/91 (85%)
Frame = -2
Query: 757 RLRELLKLSPSAPLPVEVQVMTIYTGTNGYLDSLAIRQVRKFLVELRAYLKTNKPPFHVI 578
RLRELLK SAPL VE QVMTIYTGTNGYLDSL + QVRK+LVELR Y+KTNKP F I
Sbjct: 416 RLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEI 475
Query: 577 ISSTKTFTGEAEALLKEAIQEQMELFLLQEQ 485
ISSTKTFT EAEALLKEAIQEQME FLLQEQ
Sbjct: 476 ISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506
>ref|NP_054917.1| ATP synthase CF1 alpha chain [Spinacia oleracea]
gi|7636090|emb|CAB88710.1| ATPase subunit I [Spinacia
oleracea]
Length = 431
Score = 140 bits (354), Expect = 2e-32
Identities = 75/91 (82%), Positives = 78/91 (85%)
Frame = -2
Query: 757 RLRELLKLSPSAPLPVEVQVMTIYTGTNGYLDSLAIRQVRKFLVELRAYLKTNKPPFHVI 578
RLRELLK SAPL VE QVMTIYTGTNGYLDSL + QVRK+LVELR Y+KTNKP F I
Sbjct: 340 RLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEI 399
Query: 577 ISSTKTFTGEAEALLKEAIQEQMELFLLQEQ 485
ISSTKTFT EAEALLKEAIQEQME FLLQEQ
Sbjct: 400 ISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 430
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,396,563
Number of Sequences: 1393205
Number of extensions: 11418397
Number of successful extensions: 24602
Number of sequences better than 10.0: 261
Number of HSP's better than 10.0 without gapping: 21238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23550
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
