Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005572A_C01 KMC005572A_c01
(957 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173942.1| hypothetical protein; protein id: At1g26170.1 [... 209 4e-53
dbj|BAC20620.1| similar to RANBP9 isoform 1 [Oryza sativa (japon... 200 3e-50
dbj|BAB19329.1| hypothetical protein [Oryza sativa (japonica cul... 76 9e-13
dbj|BAA91588.1| unnamed protein product [Homo sapiens] gi|130978... 71 3e-11
dbj|BAB55181.1| unnamed protein product [Homo sapiens] 71 3e-11
>ref|NP_173942.1| hypothetical protein; protein id: At1g26170.1 [Arabidopsis thaliana]
gi|25518773|pir||H86387 hypothetical protein F28B23.15 -
Arabidopsis thaliana
gi|12321178|gb|AAG50680.1|AC079829_13 hypothetical
protein [Arabidopsis thaliana]
Length = 931
Score = 209 bits (533), Expect = 4e-53
Identities = 114/204 (55%), Positives = 142/204 (68%), Gaps = 6/204 (2%)
Frame = -1
Query: 957 WTKQQG------EIQGGYQIKVTTSALALLLTSMHNELAKIHVHGHLIKSGMGITTRSKA 796
WTKQQG EIQ YQIKVTTSALALLL++ H+E AK++V G I+S GITTRSKA
Sbjct: 732 WTKQQGKHLYPWEIQSAYQIKVTTSALALLLSTRHSEFAKVNVPGSPIQSNGGITTRSKA 791
Query: 795 KSAPDQWVMLPLPTKIVGLLGDSLTEIQEQVSAGDDEDSDWEEVHTQMALKMIERFLYSV 616
+SAP+QW ++PLP KI+ LL D+L EIQEQV + +DEDS+WEEVH A K + L S
Sbjct: 792 RSAPEQWTIIPLPMKILALLADTLIEIQEQVLSNEDEDSEWEEVHEGDA-KAEKDLLRSA 850
Query: 615 STSTSGKTTYEHLEAMAEVFNKDQDDQYEDDLLSIADPLNQINLVNYLVDFFVNFSQSDR 436
TS K TY+ LEAMA N QDD+ +D LL DPLN+INL +Y+ DF + FS DR
Sbjct: 851 GTSQFSKPTYDQLEAMARFEN--QDDEVDDHLLG-TDPLNEINLASYVADFLLKFSSEDR 907
Query: 435 QLLDHICKSLTESQRNAIKLVLQR 364
L D++C+ LT +QRN I + L R
Sbjct: 908 PLFDNLCQGLTNAQRNVIHMALNR 931
>dbj|BAC20620.1| similar to RANBP9 isoform 1 [Oryza sativa (japonica cultivar-group)]
Length = 1072
Score = 200 bits (508), Expect = 3e-50
Identities = 101/201 (50%), Positives = 141/201 (69%), Gaps = 3/201 (1%)
Frame = -1
Query: 957 WTKQQGEIQGGYQIKVTTSALALLLTSMHNELAKIHVHGHLIKSGMGITTRSKAKSAPDQ 778
W++ Q EIQG YQIKVTT+ALALL+++ H EL++I V GH+IK+ GITTRSKA+ APD
Sbjct: 874 WSQLQSEIQGAYQIKVTTTALALLISTRHPELSRIEVQGHIIKTSAGITTRSKARVAPDH 933
Query: 777 WVMLPLPTKIVGLLGDSLTEIQEQVSAGDD---EDSDWEEVHTQMALKMIERFLYSVSTS 607
W +PLP KI LL D+L EIQEQV +D EDSDWEE+ + + +YS S
Sbjct: 934 WTKIPLPAKIFSLLADTLAEIQEQVVGDEDDCEEDSDWEEIQNGDS-SIPHDMIYSASVP 992
Query: 606 TSGKTTYEHLEAMAEVFNKDQDDQYEDDLLSIADPLNQINLVNYLVDFFVNFSQSDRQLL 427
++ K + EHL AMA+VF++D D Y+DDL AD LN++ L ++L + FV +SDR L
Sbjct: 993 SNAKPSVEHLNAMAKVFDEDDDGSYDDDLAK-ADSLNEVKLSDFLTNIFVKLWESDRLLF 1051
Query: 426 DHICKSLTESQRNAIKLVLQR 364
+++C++LT+SQR A+ VL++
Sbjct: 1052 EYLCQALTDSQRTAVDKVLRK 1072
>dbj|BAB19329.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 755
Score = 75.9 bits (185), Expect = 9e-13
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Frame = -1
Query: 738 LGDSLTEIQEQVSAGDD---EDSDWEEVHTQMALKMIERFLYSVSTSTSGKTTYEHLEAM 568
L ++L EIQEQV +D EDSDWEE+ + + +YS S ++ K + EHL AM
Sbjct: 648 LQNTLAEIQEQVVGDEDDCEEDSDWEEIQNGDS-SIPHDMIYSASVPSNAKPSVEHLNAM 706
Query: 567 AEVFNKDQDDQYEDDLLSIADPLNQINLVNYLVDFFVNFSQSDRQLLDHICKSLTESQRN 388
A+VF+ ++ L ++L + FV +SDR L +++C++LT+SQR
Sbjct: 707 AKVFD-------------------EVKLSDFLTNIFVKLWESDRLLFEYLCQALTDSQRT 747
Query: 387 AIKLVLQR 364
A+ VL++
Sbjct: 748 AVDKVLRK 755
>dbj|BAA91588.1| unnamed protein product [Homo sapiens]
gi|13097825|gb|AAH03604.1|AAH03604 hypothetical protein
FLJ10402 [Homo sapiens]
Length = 441
Score = 70.9 bits (172), Expect = 3e-11
Identities = 57/200 (28%), Positives = 94/200 (46%), Gaps = 5/200 (2%)
Frame = -1
Query: 957 WTKQQGEIQGGYQIKVTTSALALLLTSMHN----ELAKIHVHGHLIKS-GMGITTRSKAK 793
WT +Q G Y+ KV++ AL LL N L I V G I S GI TRSK+
Sbjct: 243 WTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSA 302
Query: 792 SAPDQWVMLPLPTKIVGLLGDSLTEIQEQVSAGDDEDSDWEEVHTQMALKMIERFLYSVS 613
P++W +PL KI+ L+ + L+ + E +A ++W + + + E
Sbjct: 303 KNPERWTNIPLLVKILKLIINELSNVMEANAARQATPAEWSQDDSNDMWEDQEEEEEEEE 362
Query: 612 TSTSGKTTYEHLEAMAEVFNKDQDDQYEDDLLSIADPLNQINLVNYLVDFFVNFSQSDRQ 433
+G+ + L A ++ +D EDD ++ DPL QI+L YL DF F+Q
Sbjct: 363 DGLAGQLLSDIL-ATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCY 421
Query: 432 LLDHICKSLTESQRNAIKLV 373
++ L +++R ++ +
Sbjct: 422 IM--FSGHLNDNERRVLQTI 439
>dbj|BAB55181.1| unnamed protein product [Homo sapiens]
Length = 674
Score = 70.9 bits (172), Expect = 3e-11
Identities = 57/200 (28%), Positives = 94/200 (46%), Gaps = 5/200 (2%)
Frame = -1
Query: 957 WTKQQGEIQGGYQIKVTTSALALLLTSMHN----ELAKIHVHGHLIKS-GMGITTRSKAK 793
WT +Q G Y+ KV++ AL LL N L I V G I S GI TRSK+
Sbjct: 476 WTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSA 535
Query: 792 SAPDQWVMLPLPTKIVGLLGDSLTEIQEQVSAGDDEDSDWEEVHTQMALKMIERFLYSVS 613
P++W +PL KI+ L+ + L+ + E +A ++W + + + E
Sbjct: 536 KNPERWTNIPLLVKILKLIINELSNVMEANAAPQATPAEWSQDDSNDMWEDQEEEEEEEE 595
Query: 612 TSTSGKTTYEHLEAMAEVFNKDQDDQYEDDLLSIADPLNQINLVNYLVDFFVNFSQSDRQ 433
+G+ + L A ++ +D EDD ++ DPL QI+L YL DF F+Q
Sbjct: 596 DGLAGQLLSDIL-ATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCY 654
Query: 432 LLDHICKSLTESQRNAIKLV 373
++ L +++R ++ +
Sbjct: 655 IM--FSGHLNDNERRVLQTI 672
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 799,164,945
Number of Sequences: 1393205
Number of extensions: 17722593
Number of successful extensions: 50504
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 47463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50334
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54078381240
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
