Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005568A_C01 KMC005568A_c01
(947 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa] 64 5e-16
ref|NP_175351.1| hypothetical protein; protein id: At1g49250.1 [... 64 8e-16
ref|NP_172293.1| ligase I, putative; protein id: At1g08130.1 [Ar... 64 1e-15
sp|Q42572|DNLI_ARATH DNA ligase (Polydeoxyribonucleotide synthas... 64 1e-15
pir||S71278 DNA ligase (ATP) (EC 6.5.1.1) - Arabidopsis thaliana... 64 1e-15
>gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa]
Length = 810
Score = 63.5 bits (153), Expect(2) = 5e-16
Identities = 31/38 (81%), Positives = 35/38 (91%)
Frame = -3
Query: 945 ADLTISPVYRAAVGIVDSNKGISLRFPRLLRVRPDQDP 832
ADL+ISPV+RAA GIVD NKGISLRFPRLLRVR D++P
Sbjct: 742 ADLSISPVHRAANGIVDPNKGISLRFPRLLRVRDDKNP 779
Score = 43.5 bits (101), Expect(2) = 5e-16
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 839 KIPEPATSSEQVAEMYNAQKHNPTDNPNDNEDD 741
K PE AT+SEQVA+MY AQK +N ND+EDD
Sbjct: 777 KNPEQATTSEQVADMYRAQKIYHANNNNDDEDD 809
>ref|NP_175351.1| hypothetical protein; protein id: At1g49250.1 [Arabidopsis
thaliana]
Length = 657
Score = 63.5 bits (153), Expect(2) = 8e-16
Identities = 28/38 (73%), Positives = 35/38 (91%)
Frame = -3
Query: 945 ADLTISPVYRAAVGIVDSNKGISLRFPRLLRVRPDQDP 832
ADLT+SPVYR A+GIVD +KGISLRFPRL+R+R D++P
Sbjct: 590 ADLTVSPVYREAIGIVDPDKGISLRFPRLVRIRKDKNP 627
Score = 42.7 bits (99), Expect(2) = 8e-16
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -1
Query: 839 KIPEPATSSEQVAEMYNAQKHNPTDNPNDNEDD 741
K PE AT+S+Q+AEMY AQKHN N +DD
Sbjct: 625 KNPEEATTSDQIAEMYQAQKHNQPSNQGKVDDD 657
>ref|NP_172293.1| ligase I, putative; protein id: At1g08130.1 [Arabidopsis thaliana]
gi|6579215|gb|AAF18258.1|AC011438_20 T23G18.1
[Arabidopsis thaliana]
Length = 794
Score = 63.5 bits (153), Expect(2) = 1e-15
Identities = 31/38 (81%), Positives = 34/38 (88%)
Frame = -3
Query: 945 ADLTISPVYRAAVGIVDSNKGISLRFPRLLRVRPDQDP 832
ADLTISPV+RAA GIVD +KGISLRFPRLLRVR D+ P
Sbjct: 727 ADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKP 764
Score = 42.4 bits (98), Expect(2) = 1e-15
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -1
Query: 839 KIPEPATSSEQVAEMYNAQKHNPTDNPNDNEDD 741
K PE ATSSEQ+A++Y AQKHN N +DD
Sbjct: 762 KKPEEATSSEQIADLYQAQKHNHPSNEVKGDDD 794
>sp|Q42572|DNLI_ARATH DNA ligase (Polydeoxyribonucleotide synthase [ATP])
gi|26449576|dbj|BAC41914.1| putative DNA ligase
[Arabidopsis thaliana] gi|29029040|gb|AAO64899.1|
At1g08130 [Arabidopsis thaliana]
Length = 790
Score = 63.5 bits (153), Expect(2) = 1e-15
Identities = 31/38 (81%), Positives = 34/38 (88%)
Frame = -3
Query: 945 ADLTISPVYRAAVGIVDSNKGISLRFPRLLRVRPDQDP 832
ADLTISPV+RAA GIVD +KGISLRFPRLLRVR D+ P
Sbjct: 723 ADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKP 760
Score = 42.4 bits (98), Expect(2) = 1e-15
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -1
Query: 839 KIPEPATSSEQVAEMYNAQKHNPTDNPNDNEDD 741
K PE ATSSEQ+A++Y AQKHN N +DD
Sbjct: 758 KKPEEATSSEQIADLYQAQKHNHPSNEVKGDDD 790
>pir||S71278 DNA ligase (ATP) (EC 6.5.1.1) - Arabidopsis thaliana
gi|1359495|emb|CAA66599.1| DNA ligase [Arabidopsis
thaliana]
Length = 790
Score = 63.5 bits (153), Expect(2) = 1e-15
Identities = 31/38 (81%), Positives = 34/38 (88%)
Frame = -3
Query: 945 ADLTISPVYRAAVGIVDSNKGISLRFPRLLRVRPDQDP 832
ADLTISPV+RAA GIVD +KGISLRFPRLLRVR D+ P
Sbjct: 723 ADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKP 760
Score = 42.4 bits (98), Expect(2) = 1e-15
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -1
Query: 839 KIPEPATSSEQVAEMYNAQKHNPTDNPNDNEDD 741
K PE ATSSEQ+A++Y AQKHN N +DD
Sbjct: 758 KKPEEATSSEQIADLYQAQKHNHPSNEVKGDDD 790
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 782,863,719
Number of Sequences: 1393205
Number of extensions: 16776203
Number of successful extensions: 53936
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 51243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53860
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53246406144
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
